/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_0 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_100 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_101 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_102 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_103 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_104 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_105 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_106 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_107 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_108 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_109 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_10 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_110 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_111 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_112 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_113 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_114 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_115 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_116 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_117 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_118 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_119 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_11 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_120 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_121 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_122 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_123 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_124 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_125 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_126 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_127 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_128 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_129 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_12 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_130 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_131 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_132 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_133 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_134 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_135 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_136 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_137 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_138 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_139 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_13 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_140 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_141 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_142 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_143 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_144 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_145 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_146 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_147 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_148 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_149 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_14 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_150 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_151 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_152 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_153 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_154 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_155 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_156 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_157 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_158 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_159 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_15 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_160 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_161 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_162 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_163 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_164 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_165 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_166 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_167 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_168 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_169 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_16 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_170 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_171 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_172 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_173 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_174 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_175 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_176 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_177 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_178 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_179 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_17 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_180 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_181 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_182 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_183 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_184 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_185 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_186 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_187 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_188 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_189 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_18 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_190 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_191 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_192 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_193 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_194 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_195 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_196 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_197 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_198 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_199 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_19 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_1 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_200 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_201 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_202 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_203 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_204 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_205 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_206 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_207 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_208 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_209 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_20 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_210 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_211 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_212 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_213 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_214 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_215 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_216 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_217 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_218 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_219 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_21 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_220 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_221 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_222 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_223 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_224 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_225 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_226 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_227 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_228 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_229 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_22 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_230 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_231 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_232 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_233 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_234 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_235 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_236 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_237 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_238 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_239 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_23 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_240 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_241 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_242 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_243 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_244 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_245 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_246 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_247 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_248 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_249 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_24 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_250 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_251 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_252 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_253 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_254 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_255 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_256 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_257 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_258 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_259 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_25 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_260 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_261 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_262 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_263 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_264 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_265 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_266 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_267 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_268 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_269 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_26 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_270 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_271 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_272 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_273 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_274 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_275 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_276 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_277 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_278 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_279 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_27 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_280 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_281 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_282 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_283 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_284 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_285 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_286 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_287 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_288 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_289 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_28 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_290 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_291 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_292 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_293 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_294 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_295 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_296 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_297 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_298 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_299 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_29 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_2 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_300 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_301 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_302 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_303 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_304 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_305 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_306 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_307 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_308 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_309 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_30 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_310 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_311 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_312 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_313 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_314 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_315 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_316 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_317 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_318 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_319 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_31 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_320 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_321 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_322 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_323 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_324 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_325 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_326 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_327 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_328 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_329 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_32 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_330 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_331 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_332 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_333 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_334 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_335 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_336 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_337 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_338 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_339 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_33 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_340 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_341 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_342 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_343 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_344 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_345 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_346 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_347 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_348 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_349 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_34 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_350 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_351 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_352 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_353 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_354 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_355 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_356 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_357 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_358 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_359 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_35 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_36 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_37 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_38 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_39 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_3 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_40 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_41 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_42 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_43 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_44 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_45 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_46 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_47 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_48 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_49 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_4 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_50 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_51 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_52 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_53 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_54 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_55 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_56 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_57 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_58 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_59 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_5 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_60 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_61 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_62 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_63 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_64 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_65 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_66 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_67 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_68 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_69 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_6 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_70 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_71 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_72 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_73 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_74 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_75 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_76 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_77 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_78 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_79 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_7 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_80 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_81 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_82 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_83 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_84 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_85 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_86 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_87 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_88 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_89 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_8 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_90 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_91 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_92 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_93 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_94 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_95 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_96 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_97 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_98 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_99 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_9 -s M3KO1_fast5_pass/gpfs/scratch/depled01/ENA/M3KO1_fast5_pass/fast5_pass/FAL49909_d3dd64269444a508a5a391fcd5d54dcd7c53fb67_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_0 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_100 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_101 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_102 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_103 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_104 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_105 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_106 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_107 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_108 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_109 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_10 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_110 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_111 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_112 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_113 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_114 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_115 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_116 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_117 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_118 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_119 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_11 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_120 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_121 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_122 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_123 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_124 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_125 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_126 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_127 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_128 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_129 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_12 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_130 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_131 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_132 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_133 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_134 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_135 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_136 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_137 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_138 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_139 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_13 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_140 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_141 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_142 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_143 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_144 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_145 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_146 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_147 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_148 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_149 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_14 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_150 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_151 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_152 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_153 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_154 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_155 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_156 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_157 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_158 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_159 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_15 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_160 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_161 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_162 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_163 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_164 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_165 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_166 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_167 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_168 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_169 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_16 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_170 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_171 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_172 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_173 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_174 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_175 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_176 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_177 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_178 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_179 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_17 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_180 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_181 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_182 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_183 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_184 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_185 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_186 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_187 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_188 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_189 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_18 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_190 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_191 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_192 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_193 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_194 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_195 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_196 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_197 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_198 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_199 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_19 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_1 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_200 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_201 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_202 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_203 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_204 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_205 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_206 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_207 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_208 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_209 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_20 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_210 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_211 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_212 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_213 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_214 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_215 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_216 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_217 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_218 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_219 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_21 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_220 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_221 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_222 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_223 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_224 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_225 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_226 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_227 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_228 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_229 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_22 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_230 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_231 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_232 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_233 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_234 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_235 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_236 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_237 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_238 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_239 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_23 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_240 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_241 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_242 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_243 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_244 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_245 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_246 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_247 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_248 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_249 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_24 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_250 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_251 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_252 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_253 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_254 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_255 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_256 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_257 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_258 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_259 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_25 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_260 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_261 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_262 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_263 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_264 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_265 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_266 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_267 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_268 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_269 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_26 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_270 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_271 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_272 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_273 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_274 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_275 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_276 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_277 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_278 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_279 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_27 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_280 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_281 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_282 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_283 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_284 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_285 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_286 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_287 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_288 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_289 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_28 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_290 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_291 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_292 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_293 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_294 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_295 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_296 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_297 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_298 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_299 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_29 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_2 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_300 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_301 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_302 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_303 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_304 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_305 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_306 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_307 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_308 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_309 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_30 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_310 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_311 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_312 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_313 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_314 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_315 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_316 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_317 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_318 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_319 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_31 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_320 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_321 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_322 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_323 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_324 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_325 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_326 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_327 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_328 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_329 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_32 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_330 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_331 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_332 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_333 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_334 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_335 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_336 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_337 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_338 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_339 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_33 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_340 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_341 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_342 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_343 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_344 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_345 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_346 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_347 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_348 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_349 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_34 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_350 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_351 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_352 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_353 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_354 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_355 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_356 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_357 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_358 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_359 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_35 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_360 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_361 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_362 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_363 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_364 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_365 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_366 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_367 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_368 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_369 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_36 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_370 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_371 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_372 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_373 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_374 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_375 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_376 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_377 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_378 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_379 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_37 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_380 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_381 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_382 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_383 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_384 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_385 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_386 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_387 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_388 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_389 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_38 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_390 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_391 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_392 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_393 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_394 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_395 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_396 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_397 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_398 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_399 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_39 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_3 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_400 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_401 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_402 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_403 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_404 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_405 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_406 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_407 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_408 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_409 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_40 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_410 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_411 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_412 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_413 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_414 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_415 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_416 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_417 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_418 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_419 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_41 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_420 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_421 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_422 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_423 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_424 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_425 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_426 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_427 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_428 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_429 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_42 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_430 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_431 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_432 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_433 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_434 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_435 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_436 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_437 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_438 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_439 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_43 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_440 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_441 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_442 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_443 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_444 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_445 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_446 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_447 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_448 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_449 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_44 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_450 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_451 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_452 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_453 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_454 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_455 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_45 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_46 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_47 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_48 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_49 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_4 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_50 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_51 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_52 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_53 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_54 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_55 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_56 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_57 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_58 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_59 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_5 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_60 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_61 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_62 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_63 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_64 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_65 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_66 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_67 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_68 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_69 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_6 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_70 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_71 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_72 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_73 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_74 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_75 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_76 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_77 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_78 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_79 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_7 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_80 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_81 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_82 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_83 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_84 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_85 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_86 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_87 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_88 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_89 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_8 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_90 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_91 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_92 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_93 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_94 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_95 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_96 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_97 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_98 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_99 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_9 -s M3KO2_fast5_pass/gpfs/scratch/depled01/ENA/M3KO2_fast5_pass/fast5_pass/FAL57284_4af399e5d2e06c646853d6e879d0c28a0b126553_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_0 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_100 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_101 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_102 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_103 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_104 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_105 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_106 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_107 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_108 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_109 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_10 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_110 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_111 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_112 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_113 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_114 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_115 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_116 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_117 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_118 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_119 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_11 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_120 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_121 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_122 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_123 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_124 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_125 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_126 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_127 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_128 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_129 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_12 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_130 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_131 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_132 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_133 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_134 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_135 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_136 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_137 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_138 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_139 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_13 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_140 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_141 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_142 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_143 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_144 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_145 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_146 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_147 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_148 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_149 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_14 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_150 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_151 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_152 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_153 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_154 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_155 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_156 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_157 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_158 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_159 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_15 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_160 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_161 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_162 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_163 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_164 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_165 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_166 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_167 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_168 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_169 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_16 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_170 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_171 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_172 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_173 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_174 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_175 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_176 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_177 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_178 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_179 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_17 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_180 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_181 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_182 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_183 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_184 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_185 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_186 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_187 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_188 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_189 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_18 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_190 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_191 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_192 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_193 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_194 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_195 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_196 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_197 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_198 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_199 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_19 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_1 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_200 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_201 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_202 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_203 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_204 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_205 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_206 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_207 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_208 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_209 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_20 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_210 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_211 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_212 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_213 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_214 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_215 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_216 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_217 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_218 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_219 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_21 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_220 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_221 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_222 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_223 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_224 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_225 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_226 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_227 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_228 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_229 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_22 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_230 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_231 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_232 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_233 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_234 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_235 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_236 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_237 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_238 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_239 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_23 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_240 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_241 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_242 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_243 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_244 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_245 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_246 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_247 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_248 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_249 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_24 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_250 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_251 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_252 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_253 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_254 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_255 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_256 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_257 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_258 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_259 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_25 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_260 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_261 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_262 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_263 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_264 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_265 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_266 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_267 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_268 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_269 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_26 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_270 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_271 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_272 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_273 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_274 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_275 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_276 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_277 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_278 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_279 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_27 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_280 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_281 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_282 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_283 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_284 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_285 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_286 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_287 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_288 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_289 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_28 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_290 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_291 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_292 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_293 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_294 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_295 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_296 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_297 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_298 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_299 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_29 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_2 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_300 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_301 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_302 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_303 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_304 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_305 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_306 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_307 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_308 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_309 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_30 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_310 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_311 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_312 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_313 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_314 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_315 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_316 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_317 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_318 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_319 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_31 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_320 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_321 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_322 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_323 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_324 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_325 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_326 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_327 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_328 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_329 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_32 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_330 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_331 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_332 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_333 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_334 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_335 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_336 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_337 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_338 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_339 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_33 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_340 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_341 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_342 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_343 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_344 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_345 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_346 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_347 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_348 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_349 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_34 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_350 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_351 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_352 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_353 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_354 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_355 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_356 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_357 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_358 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_359 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_35 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_360 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_361 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_362 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_363 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_364 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_365 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_366 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_367 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_368 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_369 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_36 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_370 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_371 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_372 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_373 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_374 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_375 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_376 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_377 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_378 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_379 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_37 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_380 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_381 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_382 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_383 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_384 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_385 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_386 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_387 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_388 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_389 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_38 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_390 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_391 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_392 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_393 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_394 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_395 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_396 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_397 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_398 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_399 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_39 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_3 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_400 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_401 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_402 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_403 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_404 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_405 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_406 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_407 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_408 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_409 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_40 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_410 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_411 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_412 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_413 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_414 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_415 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_416 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_417 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_418 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_419 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_41 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_420 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_421 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_422 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_423 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_424 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_425 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_426 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_42 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_43 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_44 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_45 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_46 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_47 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_48 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_49 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_4 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_50 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_51 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_52 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_53 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_54 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_55 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_56 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_57 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_58 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_59 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_5 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_60 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_61 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_62 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_63 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_64 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_65 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_66 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_67 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_68 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_69 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_6 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_70 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_71 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_72 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_73 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_74 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_75 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_76 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_77 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_78 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_79 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_7 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_80 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_81 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_82 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_83 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_84 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_85 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_86 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_87 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_88 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_89 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_8 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_90 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_91 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_92 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_93 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_94 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_95 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_96 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_97 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_98 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_99 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_9 -s M3P1_fast5_pass/gpfs/scratch/depled01/ENA/M3P1_fast5_pass/fast5_pass/FAL49933_fc9ef2a0ebef1fae25e06c85364a165a25c694de_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_0 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_100 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_101 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_102 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_103 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_104 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_105 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_106 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_107 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_108 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_109 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_10 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_110 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_111 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_112 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_113 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_114 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_115 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_116 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_117 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_118 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_119 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_11 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_120 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_121 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_122 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_123 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_124 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_125 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_126 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_127 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_128 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_129 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_12 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_130 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_131 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_132 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_133 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_134 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_135 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_136 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_137 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_138 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_139 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_13 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_140 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_141 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_142 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_143 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_144 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_145 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_146 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_147 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_148 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_149 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_14 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_150 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_151 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_152 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_153 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_154 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_155 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_156 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_157 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_158 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_159 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_15 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_160 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_161 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_162 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_163 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_164 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_165 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_166 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_167 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_168 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_169 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_16 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_170 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_171 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_172 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_173 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_174 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_175 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_176 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_177 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_178 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_179 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_17 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_180 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_181 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_182 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_183 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_184 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_185 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_186 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_187 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_188 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_189 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_18 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_190 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_191 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_192 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_193 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_194 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_195 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_196 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_197 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_198 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_199 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_19 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_1 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_200 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_201 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_202 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_203 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_204 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_205 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_206 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_207 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_208 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_209 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_20 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_210 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_211 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_212 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_213 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_214 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_215 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_216 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_217 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_218 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_219 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_21 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_220 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_221 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_222 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_223 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_224 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_225 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_226 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_227 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_228 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_229 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_22 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_230 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_231 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_232 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_233 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_234 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_235 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_236 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_237 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_238 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_239 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_23 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_240 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_241 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_242 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_243 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_244 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_245 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_246 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_247 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_248 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_249 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_24 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_250 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_251 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_252 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_253 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_254 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_255 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_256 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_257 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_258 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_259 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_25 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_260 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_261 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_262 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_263 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_264 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_265 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_266 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_267 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_268 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_269 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_26 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_270 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_271 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_272 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_273 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_274 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_275 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_276 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_277 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_278 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_279 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_27 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_280 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_281 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_282 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_283 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_284 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_285 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_286 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_287 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_288 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_289 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_28 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_290 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_291 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_292 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_293 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_294 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_295 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_296 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_297 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_298 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_299 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_29 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_2 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_300 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_301 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_302 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_303 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_304 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_305 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_306 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_307 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_308 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_309 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_30 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_310 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_311 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_312 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_313 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_314 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_315 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_316 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_317 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_318 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_319 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_31 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_320 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_321 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_322 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_323 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_324 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_325 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_326 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_327 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_328 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_329 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_32 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_330 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_331 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_332 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_333 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_334 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_335 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_336 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_337 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_338 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_339 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_33 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_340 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_341 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_342 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_343 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_344 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_345 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_346 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_347 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_348 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_349 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_34 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_350 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_351 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_352 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_353 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_354 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_355 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_356 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_357 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_358 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_359 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_35 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_360 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_361 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_362 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_363 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_364 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_365 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_366 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_367 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_368 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_369 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_36 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_370 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_371 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_372 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_373 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_374 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_375 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_376 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_377 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_378 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_379 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_37 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_380 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_381 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_382 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_383 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_384 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_385 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_386 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_387 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_388 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_389 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_38 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_390 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_391 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_392 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_393 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_394 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_395 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_396 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_397 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_398 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_399 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_39 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_3 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_400 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_401 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_402 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_403 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_404 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_405 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_406 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_407 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_408 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_409 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_40 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_410 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_411 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_412 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_413 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_414 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_415 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_416 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_417 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_418 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_419 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_41 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_420 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_421 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_422 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_423 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_424 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_425 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_426 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_427 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_428 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_429 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_42 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_430 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_431 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_432 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_433 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_434 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_435 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_436 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_437 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_438 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_439 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_43 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_440 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_441 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_442 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_44 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_45 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_46 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_47 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_48 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_49 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_4 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_50 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_51 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_52 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_53 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_54 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_55 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_56 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_57 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_58 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_59 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_5 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_60 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_61 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_62 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_63 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_64 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_65 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_66 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_67 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_68 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_69 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_6 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_70 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_71 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_72 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_73 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_74 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_75 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_76 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_77 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_78 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_79 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_7 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_80 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_81 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_82 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_83 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_84 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_85 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_86 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_87 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_88 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_89 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_8 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_90 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_91 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_92 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_93 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_94 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_95 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_96 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_97 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_98 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_99 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_9 -s M3P2_fast5_pass/gpfs/scratch/depled01/ENA/M3P2_fast5_pass/fast5_pass/FAL54072_7f0367892a92bddbdd90d853de6aafbc39275f95_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none