/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa HEK_shMETTL3_Fast5.fastq > HEK_shMETTL3_Fast5.sam 2>&1 | tee HEK_shMETTL3_Fast5.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa HMEC_WT_Fast5.fastq > HMEC_WT_Fast5.sam 2>&1 | tee HMEC_WT_Fast5.minimap.logfile.txt