/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_0 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_0-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_10 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_10-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_11 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_11-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_12 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_12-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_13 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_13-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_14 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_14-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_15 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_15-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_16 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_16-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_17 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_17-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_18 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_18-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_19 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_19-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_1 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_1-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_20 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_20-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_21 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_21-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_22 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_22-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_23 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_23-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_24 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_24-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_25 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_25-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_26 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_26-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_27 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_27-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_28 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_28-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_29 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_29-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_2 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_2-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_30 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_30-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_31 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_31-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_32 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_32-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_33 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_33-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_34 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_34-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_3 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_3-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_4 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_4-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_5 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_5-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_6 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_6-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_7 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_7-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_8 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_8-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_9 -s HEK_shMETTL3_Fast5/fast5/fast5_fail/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_9-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_0 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_0-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_100 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_100-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_101 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_101-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_102 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_102-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_103 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_103-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_104 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_104-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_105 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_105-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_106 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_106-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_107 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_107-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_108 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_108-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_109 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_109-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_10 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_10-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_110 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_110-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_111 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_111-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_112 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_112-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_113 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_113-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_114 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_114-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_115 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_115-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_116 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_116-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_117 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_117-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_118 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_118-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_119 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_119-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_11 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_11-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_120 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_120-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_121 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_121-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_122 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_122-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_123 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_123-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_124 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_124-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_125 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_125-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_126 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_126-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_127 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_127-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_128 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_128-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_129 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_129-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_12 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_12-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_130 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_130-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_131 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_131-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_132 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_132-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_133 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_133-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_134 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_134-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_135 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_135-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_136 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_136-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_137 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_137-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_138 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_138-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_139 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_139-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_13 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_13-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_140 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_140-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_141 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_141-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_142 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_142-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_143 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_143-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_144 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_144-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_145 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_145-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_146 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_146-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_147 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_147-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_148 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_148-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_149 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_149-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_14 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_14-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_150 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_150-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_151 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_151-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_152 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_152-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_153 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_153-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_154 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_154-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_155 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_155-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_156 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_156-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_157 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_157-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_158 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_158-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_159 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_159-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_15 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_15-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_160 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_160-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_161 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_161-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_162 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_162-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_163 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_163-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_164 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_164-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_165 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_165-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_166 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_166-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_167 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_167-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_168 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_168-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_169 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_169-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_16 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_16-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_170 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_170-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_171 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_171-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_172 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_172-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_173 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_173-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_174 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_174-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_175 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_175-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_176 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_176-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_177 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_177-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_178 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_178-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_179 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_179-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_17 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_17-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_180 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_180-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_181 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_181-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_182 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_182-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_183 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_183-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_184 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_184-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_185 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_185-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_186 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_186-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_187 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_187-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_188 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_188-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_189 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_189-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_18 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_18-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_190 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_190-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_191 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_191-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_192 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_192-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_193 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_193-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_194 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_194-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_195 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_195-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_196 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_196-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_197 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_197-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_198 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_198-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_199 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_199-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_19 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_19-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_1 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_1-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_200 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_200-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_201 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_201-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_202 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_202-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_203 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_203-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_204 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_204-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_205 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_205-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_206 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_206-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_207 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_207-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_208 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_208-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_209 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_209-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_20 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_20-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_210 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_210-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_211 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_211-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_212 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_212-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_213 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_213-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_214 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_214-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_215 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_215-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_216 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_216-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_217 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_217-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_218 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_218-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_219 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_219-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_21 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_21-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_220 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_220-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_221 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_221-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_222 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_222-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_223 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_223-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_224 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_224-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_225 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_225-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_226 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_226-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_227 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_227-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_228 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_228-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_229 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_229-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_22 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_22-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_230 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_230-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_231 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_231-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_232 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_232-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_233 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_233-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_234 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_234-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_235 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_235-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_236 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_236-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_237 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_237-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_238 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_238-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_239 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_239-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_23 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_23-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_240 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_240-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_241 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_241-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_242 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_242-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_24 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_24-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_25 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_25-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_26 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_26-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_27 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_27-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_28 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_28-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_29 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_29-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_2 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_2-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_30 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_30-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_31 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_31-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_32 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_32-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_33 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_33-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_34 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_34-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_35 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_35-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_36 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_36-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_37 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_37-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_38 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_38-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_39 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_39-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_3 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_3-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_40 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_40-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_41 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_41-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_42 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_42-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_43 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_43-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_44 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_44-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_45 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_45-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_46 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_46-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_47 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_47-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_48 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_48-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_49 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_49-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_4 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_4-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_50 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_50-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_51 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_51-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_52 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_52-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_53 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_53-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_54 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_54-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_55 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_55-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_56 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_56-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_57 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_57-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_58 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_58-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_59 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_59-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_5 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_5-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_60 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_60-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_61 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_61-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_62 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_62-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_63 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_63-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_64 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_64-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_65 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_65-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_66 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_66-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_67 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_67-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_68 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_68-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_69 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_69-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_6 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_6-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_70 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_70-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_71 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_71-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_72 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_72-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_73 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_73-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_74 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_74-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_75 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_75-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_76 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_76-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_77 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_77-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_78 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_78-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_79 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_79-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_7 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_7-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_80 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_80-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_81 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_81-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_82 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_82-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_83 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_83-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_84 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_84-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_85 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_85-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_86 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_86-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_87 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_87-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_88 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_88-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_89 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_89-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_8 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_8-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_90 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_90-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_91 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_91-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_92 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_92-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_93 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_93-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_94 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_94-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_95 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_95-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_96 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_96-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_97 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_97-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_98 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_98-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_99 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_99-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_9 -s HEK_shMETTL3_Fast5/fast5/fast5_pass/FAK46367_a66cb4fcaee3c466e43c4957c011a4ee90f2a1ab_9-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_0 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_0-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_10 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_10-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_11 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_11-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_12 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_12-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_13 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_13-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_14 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_14-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_15 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_15-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_16 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_16-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_17 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_17-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_18 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_18-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_19 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_19-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_1 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_1-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_20 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_20-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_21 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_21-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_22 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_22-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_23 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_23-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_24 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_24-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_25 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_25-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_26 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_26-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_27 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_27-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_28 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_28-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_29 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_29-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_2 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_2-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_30 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_30-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_31 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_31-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_32 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_32-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_33 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_33-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_34 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_34-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_35 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_35-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_36 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_36-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_37 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_37-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_38 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_38-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_39 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_39-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_3 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_3-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_40 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_40-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_41 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_41-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_42 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_42-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_43 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_43-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_44 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_44-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_45 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_45-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_46 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_46-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_47 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_47-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_48 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_48-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_49 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_49-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_4 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_4-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_50 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_50-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_51 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_51-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_52 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_52-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_53 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_53-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_54 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_54-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_55 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_55-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_56 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_56-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_57 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_57-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_58 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_58-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_59 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_59-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_5 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_5-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_60 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_60-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_61 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_61-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_62 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_62-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_63 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_63-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_64 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_64-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_65 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_65-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_66 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_66-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_67 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_67-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_68 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_68-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_69 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_69-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_6 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_6-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_70 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_70-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_71 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_71-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_72 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_72-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_73 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_73-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_74 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_74-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_75 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_75-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_76 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_76-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_77 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_77-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_78 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_78-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_79 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_79-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_7 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_7-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_80 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_80-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_81 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_81-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_82 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_82-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_8 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_8-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none 
/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_9 -s /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/11-human-GSE132971/HMEC_WT_Fast5/mnt/c/data/20190121_Jackie_253/20190121_Jackie_253/20190121_Jackie_253/20190121_2041_MN30022_FAK46487_255d73ed/fast5_fail/FAK46487_2cb3160459e57ee26779ec07b9149e90b7129073_9-out --cpu_threads_per_caller 20 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none