/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa dVHS_Run1.fastq > dVHS_Run1.sam 2>&1 | tee dVHS_Run1.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa NHDF_Run1.fastq > NHDF_Run1.sam 2>&1 | tee NHDF_Run1.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa NHDF_Run2.fastq > NHDF_Run2.sam 2>&1 | tee NHDF_Run2.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa NHDF_Run4_fast5.fastq > NHDF_Run4_fast5.sam 2>&1 | tee NHDF_Run4_fast5.minimap.logfile.txt
/oak/stanford/groups/akundaje/marinovg/programs/minimap2-2.17_x64-linux/minimap2  -ax map-ont /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/2016-11-16-refFlat.fa NHDF_Run5.fastq > NHDF_Run5.sam 2>&1 | tee NHDF_Run5.minimap.logfile.txt