single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/0 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/1 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/10 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/11 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/12 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/13 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/14 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/15 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/16 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/17 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/18 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/19 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/2 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/20 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/21 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/22 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/23 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/24 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/25 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/26 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/27 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/28 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/29 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/3 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/30 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/31 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/32 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/33 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/34 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/35 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/36 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/37 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/38 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/39 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/4 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/40 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/41 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/42 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/43 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/44 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/45 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/46 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/47 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/48 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/49 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/5 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/50 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/51 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/52 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/53 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/54 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/55 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/56 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/57 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/58 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/59 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/6 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/60 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/61 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/62 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/63 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/64 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/65 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/66 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/67 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/7 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/8 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_A549_directRNA_replicate1_run1/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate1_run1/9 --filename_base batch_output --batch_size 1000 --recursive
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/100 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1000 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1000 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1001 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1001 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1002 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1002 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1003 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1003 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1004 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1004 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1005 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1005 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1006 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1006 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1007 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1007 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1008 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1008 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1009 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1009 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/101 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1010 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1010 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1011 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1011 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1012 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1012 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1013 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1013 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1014 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1014 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1015 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1015 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1016 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1016 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1017 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1017 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1018 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1018 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1019 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1019 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/102 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1020 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1020 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1021 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1021 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1022 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1022 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1023 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1023 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1024 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1024 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1025 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1025 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1026 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1026 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1027 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1027 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1028 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1028 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1029 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1029 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/103 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1030 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1030 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1031 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1031 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1032 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1032 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1033 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1033 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1034 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1034 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1035 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1035 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1036 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1036 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1037 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1037 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1038 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1038 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1039 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1039 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/104 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1040 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1040 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1041 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1041 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1042 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1042 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1043 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1043 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1044 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1044 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1045 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1045 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1046 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1046 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1047 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1047 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1048 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1048 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1049 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1049 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/105 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1050 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1050 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1051 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1051 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1052 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1052 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1053 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1053 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1054 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1054 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1055 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1055 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1056 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1056 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1057 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1057 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1058 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1058 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1059 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1059 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/106 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1060 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1060 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1061 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1061 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1062 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1062 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1063 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1063 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1064 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1064 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1065 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1065 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1066 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1066 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1067 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1067 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1068 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1068 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1069 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1069 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/107 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1070 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1070 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1071 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1071 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1072 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1072 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1073 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1073 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1074 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1074 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1075 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1075 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1076 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1076 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1077 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1077 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1078 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1078 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1079 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1079 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/108 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1080 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1080 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1081 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1081 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1082 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1082 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1083 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1083 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1084 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1084 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1085 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1085 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1086 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1086 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1087 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1087 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1088 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1088 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1089 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1089 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/109 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1090 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1090 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1091 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1091 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1092 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1092 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1093 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1093 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1094 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1094 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1095 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1095 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1096 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1096 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1097 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1097 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1098 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1098 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1099 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1099 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/11 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/110 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1100 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1101 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1102 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1103 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1104 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1105 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1106 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1107 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1108 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1109 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/111 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1110 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1111 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1112 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1113 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1114 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1115 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1116 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1117 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1118 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1119 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/112 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1120 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1121 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1122 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1123 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1124 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1125 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1126 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1127 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1128 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1129 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/113 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1130 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1131 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1132 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1133 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1134 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1135 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1136 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1137 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1138 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1139 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/114 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1140 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1141 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1142 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1143 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1144 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1145 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1146 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1147 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1148 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1149 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/115 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1150 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1151 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1152 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1153 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1154 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1155 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1156 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1157 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1158 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1159 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/116 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1160 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1161 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1162 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1163 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1164 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1165 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1166 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1167 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1168 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1169 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/117 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1170 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1171 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1172 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1173 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1174 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1175 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1176 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1177 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1178 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1179 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/118 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1180 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1181 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/1182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/1182 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/119 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/12 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/120 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/121 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/122 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/123 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/124 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/125 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/126 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/127 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/128 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/129 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/13 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/130 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/131 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/132 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/133 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/134 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/135 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/136 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/137 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/138 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/139 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/14 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/140 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/141 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/142 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/143 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/144 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/145 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/146 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/147 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/148 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/149 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/15 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/150 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/151 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/152 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/153 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/154 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/155 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/156 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/157 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/158 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/159 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/16 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/160 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/161 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/162 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/163 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/164 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/165 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/166 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/167 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/168 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/169 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/17 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/170 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/171 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/172 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/173 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/174 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/175 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/176 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/177 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/178 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/179 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/18 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/180 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/181 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/182 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/183 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/184 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/185 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/186 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/187 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/188 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/189 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/19 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/190 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/191 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/192 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/193 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/194 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/195 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/196 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/197 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/198 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/199 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/20 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/200 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/201 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/202 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/203 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/204 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/205 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/206 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/207 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/208 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/209 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/21 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/210 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/211 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/212 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/213 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/214 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/215 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/216 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/217 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/218 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/219 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/22 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/220 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/221 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/222 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/223 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/224 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/225 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/226 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/227 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/228 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/229 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/23 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/230 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/231 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/232 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/233 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/234 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/235 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/236 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/237 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/238 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/239 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/24 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/240 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/241 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/242 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/243 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/244 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/245 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/246 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/247 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/248 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/249 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/25 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/250 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/251 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/252 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/253 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/254 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/255 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/256 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/257 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/258 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/259 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/26 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/260 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/261 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/262 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/263 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/264 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/265 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/266 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/267 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/268 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/269 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/27 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/270 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/271 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/272 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/273 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/274 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/275 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/276 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/277 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/278 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/279 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/28 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/280 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/281 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/282 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/283 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/284 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/285 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/286 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/287 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/288 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/289 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/29 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/290 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/291 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/292 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/293 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/294 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/295 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/296 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/297 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/298 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/298 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/299 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/299 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/30 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/300 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/300 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/301 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/301 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/302 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/302 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/303 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/303 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/304 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/304 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/305 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/305 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/306 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/306 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/307 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/307 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/308 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/308 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/309 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/309 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/31 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/310 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/310 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/311 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/311 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/312 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/312 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/313 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/313 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/314 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/314 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/315 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/315 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/316 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/316 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/317 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/317 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/318 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/318 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/319 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/319 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/32 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/320 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/320 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/321 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/321 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/322 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/322 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/323 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/323 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/324 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/324 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/325 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/325 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/326 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/326 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/327 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/327 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/328 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/328 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/329 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/329 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/33 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/330 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/330 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/331 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/331 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/332 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/332 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/333 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/333 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/334 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/334 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/335 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/335 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/336 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/336 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/337 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/337 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/338 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/338 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/339 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/339 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/34 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/340 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/340 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/341 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/341 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/342 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/342 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/343 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/343 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/344 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/344 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/345 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/345 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/346 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/346 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/347 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/347 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/348 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/348 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/349 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/349 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/35 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/350 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/350 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/351 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/351 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/352 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/352 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/353 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/353 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/354 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/354 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/355 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/355 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/356 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/356 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/357 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/357 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/358 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/358 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/359 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/359 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/36 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/360 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/360 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/361 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/361 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/362 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/362 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/363 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/363 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/364 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/364 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/365 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/365 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/366 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/366 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/367 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/367 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/368 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/368 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/369 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/369 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/37 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/370 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/370 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/371 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/371 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/372 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/372 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/373 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/373 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/374 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/374 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/375 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/375 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/376 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/376 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/377 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/377 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/378 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/378 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/379 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/379 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/38 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/380 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/380 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/381 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/381 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/382 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/382 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/383 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/383 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/384 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/384 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/385 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/385 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/386 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/386 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/387 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/387 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/388 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/388 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/389 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/389 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/39 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/390 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/390 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/391 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/391 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/392 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/392 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/393 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/393 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/394 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/394 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/395 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/395 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/396 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/396 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/397 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/397 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/398 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/398 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/399 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/399 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/40 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/400 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/400 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/401 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/401 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/402 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/402 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/403 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/403 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/404 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/404 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/405 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/405 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/406 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/406 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/407 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/407 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/408 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/408 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/409 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/409 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/41 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/410 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/410 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/411 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/411 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/412 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/412 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/413 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/413 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/414 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/414 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/415 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/415 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/416 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/416 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/417 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/417 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/418 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/418 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/419 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/419 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/42 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/420 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/420 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/421 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/421 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/422 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/422 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/423 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/423 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/424 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/424 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/425 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/425 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/426 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/426 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/427 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/427 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/428 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/428 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/429 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/429 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/43 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/430 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/430 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/431 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/431 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/432 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/432 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/433 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/433 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/434 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/434 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/435 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/435 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/436 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/436 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/437 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/437 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/438 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/438 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/439 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/439 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/44 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/440 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/440 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/441 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/441 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/442 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/442 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/443 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/443 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/444 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/444 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/445 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/445 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/446 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/446 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/447 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/447 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/448 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/448 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/449 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/449 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/45 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/450 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/450 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/451 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/451 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/452 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/452 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/453 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/453 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/454 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/454 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/455 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/455 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/456 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/456 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/457 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/457 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/458 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/458 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/459 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/459 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/46 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/460 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/460 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/461 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/461 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/462 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/462 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/463 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/463 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/464 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/464 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/465 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/465 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/466 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/466 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/467 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/467 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/468 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/468 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/469 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/469 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/47 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/470 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/470 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/471 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/471 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/472 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/472 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/473 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/473 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/474 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/474 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/475 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/475 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/476 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/476 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/477 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/477 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/478 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/478 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/479 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/479 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/48 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/480 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/480 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/481 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/481 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/482 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/482 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/483 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/483 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/484 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/484 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/485 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/485 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/486 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/486 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/487 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/487 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/488 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/488 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/489 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/489 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/49 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/490 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/490 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/491 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/491 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/492 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/492 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/493 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/493 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/494 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/494 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/495 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/495 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/496 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/496 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/497 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/497 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/498 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/498 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/499 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/499 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/50 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/500 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/500 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/501 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/501 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/502 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/502 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/503 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/503 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/504 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/504 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/505 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/505 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/506 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/506 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/507 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/507 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/508 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/508 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/509 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/509 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/51 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/510 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/510 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/511 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/511 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/512 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/512 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/513 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/513 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/514 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/514 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/515 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/515 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/516 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/516 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/517 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/517 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/518 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/518 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/519 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/519 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/52 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/520 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/520 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/521 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/521 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/522 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/522 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/523 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/523 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/524 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/524 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/525 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/525 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/526 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/526 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/527 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/527 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/528 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/528 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/529 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/529 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/53 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/530 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/530 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/531 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/531 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/532 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/532 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/533 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/533 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/534 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/534 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/535 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/535 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/536 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/536 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/537 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/537 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/538 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/538 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/539 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/539 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/54 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/540 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/540 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/541 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/541 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/542 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/542 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/543 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/543 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/544 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/544 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/545 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/545 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/546 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/546 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/547 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/547 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/548 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/548 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/549 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/549 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/55 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/550 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/550 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/551 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/551 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/552 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/552 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/553 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/553 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/554 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/554 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/555 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/555 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/556 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/556 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/557 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/557 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/558 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/558 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/559 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/559 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/56 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/560 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/560 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/561 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/561 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/562 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/562 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/563 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/563 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/564 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/564 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/565 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/565 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/566 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/566 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/567 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/567 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/568 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/568 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/569 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/569 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/57 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/570 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/570 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/571 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/571 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/572 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/572 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/573 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/573 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/574 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/574 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/575 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/575 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/576 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/576 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/577 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/577 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/578 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/578 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/579 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/579 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/58 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/580 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/580 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/581 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/581 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/582 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/582 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/583 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/583 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/584 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/584 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/585 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/585 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/586 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/586 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/587 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/587 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/588 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/588 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/589 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/589 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/59 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/590 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/590 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/591 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/591 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/592 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/592 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/593 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/593 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/594 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/594 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/595 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/595 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/596 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/596 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/597 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/597 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/598 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/598 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/599 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/599 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/60 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/600 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/600 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/601 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/601 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/602 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/602 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/603 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/603 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/604 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/604 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/605 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/605 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/606 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/606 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/607 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/607 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/608 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/608 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/609 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/609 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/61 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/610 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/610 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/611 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/611 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/612 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/612 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/613 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/613 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/614 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/614 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/615 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/615 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/616 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/616 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/617 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/617 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/618 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/618 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/619 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/619 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/62 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/620 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/620 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/621 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/621 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/622 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/622 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/623 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/623 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/624 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/624 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/625 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/625 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/626 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/626 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/627 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/627 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/628 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/628 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/629 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/629 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/63 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/630 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/630 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/631 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/631 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/632 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/632 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/633 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/633 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/634 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/634 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/635 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/635 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/636 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/636 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/637 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/637 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/638 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/638 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/639 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/639 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/64 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/640 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/640 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/641 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/641 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/642 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/642 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/643 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/643 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/644 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/644 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/645 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/645 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/646 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/646 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/647 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/647 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/648 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/648 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/649 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/649 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/65 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/650 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/650 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/651 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/651 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/652 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/652 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/653 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/653 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/654 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/654 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/655 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/655 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/656 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/656 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/657 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/657 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/658 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/658 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/659 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/659 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/66 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/660 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/660 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/661 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/661 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/662 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/662 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/663 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/663 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/664 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/664 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/665 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/665 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/666 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/666 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/667 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/667 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/668 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/668 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/669 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/669 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/67 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/670 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/670 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/671 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/671 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/672 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/672 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/673 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/673 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/674 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/674 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/675 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/675 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/676 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/676 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/677 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/677 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/678 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/678 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/679 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/679 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/68 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/680 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/680 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/681 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/681 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/682 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/682 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/683 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/683 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/684 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/684 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/685 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/685 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/686 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/686 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/687 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/687 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/688 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/688 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/689 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/689 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/69 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/690 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/690 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/691 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/691 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/692 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/692 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/693 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/693 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/694 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/694 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/695 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/695 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/696 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/696 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/697 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/697 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/698 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/698 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/699 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/699 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/70 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/700 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/700 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/701 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/701 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/702 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/702 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/703 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/703 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/704 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/704 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/705 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/705 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/706 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/706 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/707 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/707 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/708 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/708 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/709 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/709 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/71 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/710 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/710 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/711 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/711 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/712 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/712 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/713 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/713 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/714 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/714 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/715 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/715 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/716 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/716 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/717 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/717 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/718 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/718 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/719 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/719 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/72 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/720 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/720 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/721 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/721 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/722 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/722 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/723 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/723 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/724 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/724 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/725 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/725 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/726 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/726 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/727 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/727 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/728 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/728 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/729 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/729 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/73 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/730 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/730 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/731 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/731 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/732 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/732 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/733 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/733 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/734 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/734 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/735 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/735 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/736 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/736 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/737 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/737 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/738 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/738 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/739 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/739 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/74 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/740 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/740 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/741 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/741 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/742 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/742 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/743 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/743 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/744 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/744 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/745 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/745 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/746 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/746 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/747 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/747 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/748 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/748 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/749 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/749 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/75 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/750 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/750 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/751 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/751 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/752 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/752 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/753 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/753 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/754 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/754 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/755 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/755 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/756 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/756 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/757 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/757 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/758 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/758 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/759 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/759 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/76 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/760 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/760 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/761 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/761 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/762 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/762 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/763 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/763 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/764 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/764 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/765 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/765 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/766 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/766 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/767 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/767 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/768 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/768 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/769 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/769 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/77 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/770 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/770 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/771 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/771 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/772 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/772 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/773 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/773 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/774 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/774 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/775 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/775 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/776 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/776 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/777 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/777 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/778 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/778 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/779 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/779 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/78 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/780 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/780 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/781 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/781 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/782 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/782 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/783 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/783 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/784 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/784 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/785 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/785 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/786 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/786 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/787 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/787 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/788 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/788 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/789 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/789 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/79 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/790 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/790 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/791 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/791 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/792 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/792 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/793 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/793 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/794 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/794 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/795 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/795 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/796 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/796 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/797 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/797 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/798 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/798 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/799 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/799 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/80 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/800 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/800 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/801 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/801 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/802 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/802 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/803 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/803 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/804 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/804 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/805 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/805 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/806 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/806 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/807 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/807 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/808 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/808 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/809 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/809 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/81 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/810 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/810 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/811 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/811 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/812 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/812 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/813 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/813 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/814 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/814 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/815 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/815 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/816 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/816 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/817 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/817 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/818 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/818 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/819 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/819 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/82 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/820 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/820 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/821 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/821 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/822 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/822 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/823 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/823 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/824 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/824 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/825 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/825 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/826 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/826 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/827 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/827 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/828 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/828 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/829 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/829 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/83 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/830 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/830 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/831 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/831 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/832 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/832 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/833 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/833 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/834 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/834 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/835 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/835 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/836 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/836 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/837 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/837 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/838 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/838 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/839 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/839 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/84 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/840 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/840 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/841 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/841 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/842 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/842 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/843 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/843 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/844 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/844 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/845 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/845 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/846 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/846 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/847 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/847 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/848 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/848 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/849 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/849 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/85 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/850 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/850 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/851 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/851 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/852 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/852 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/853 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/853 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/854 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/854 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/855 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/855 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/856 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/856 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/857 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/857 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/858 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/858 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/859 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/859 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/86 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/860 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/860 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/861 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/861 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/862 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/862 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/863 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/863 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/864 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/864 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/865 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/865 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/866 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/866 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/867 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/867 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/868 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/868 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/869 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/869 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/87 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/870 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/870 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/871 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/871 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/872 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/872 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/873 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/873 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/874 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/874 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/875 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/875 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/876 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/876 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/877 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/877 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/878 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/878 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/879 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/879 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/88 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/880 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/880 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/881 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/881 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/882 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/882 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/883 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/883 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/884 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/884 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/885 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/885 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/886 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/886 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/887 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/887 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/888 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/888 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/889 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/889 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/89 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/890 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/890 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/891 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/891 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/892 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/892 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/893 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/893 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/894 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/894 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/895 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/895 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/896 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/896 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/897 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/897 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/898 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/898 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/899 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/899 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/9 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/90 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/900 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/900 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/901 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/901 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/902 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/902 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/903 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/903 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/904 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/904 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/905 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/905 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/906 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/906 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/907 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/907 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/908 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/908 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/909 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/909 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/91 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/910 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/910 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/911 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/911 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/912 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/912 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/913 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/913 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/914 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/914 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/915 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/915 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/916 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/916 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/917 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/917 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/918 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/918 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/919 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/919 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/92 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/920 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/920 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/921 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/921 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/922 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/922 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/923 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/923 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/924 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/924 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/925 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/925 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/926 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/926 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/927 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/927 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/928 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/928 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/929 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/929 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/93 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/930 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/930 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/931 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/931 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/932 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/932 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/933 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/933 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/934 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/934 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/935 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/935 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/936 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/936 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/937 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/937 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/938 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/938 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/939 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/939 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/94 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/940 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/940 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/941 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/941 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/942 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/942 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/943 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/943 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/944 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/944 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/945 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/945 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/946 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/946 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/947 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/947 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/948 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/948 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/949 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/949 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/95 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/950 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/950 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/951 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/951 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/952 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/952 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/953 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/953 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/954 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/954 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/955 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/955 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/956 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/956 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/957 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/957 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/958 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/958 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/959 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/959 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/96 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/960 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/960 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/961 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/961 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/962 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/962 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/963 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/963 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/964 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/964 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/965 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/965 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/966 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/966 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/967 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/967 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/968 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/968 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/969 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/969 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/97 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/970 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/970 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/971 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/971 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/972 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/972 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/973 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/973 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/974 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/974 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/975 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/975 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/976 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/976 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/977 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/977 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/978 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/978 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/979 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/979 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/98 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/980 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/980 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/981 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/981 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/982 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/982 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/983 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/983 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/984 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/984 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/985 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/985 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/986 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/986 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/987 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/987 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/988 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/988 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/989 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/989 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/99 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/990 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/990 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/991 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/991 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/992 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/992 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/993 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/993 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/994 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/994 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/995 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/995 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/996 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/996 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/997 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/997 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/998 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/998 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/7145a350c3644e64bc7f5472f52a6387d210819a_R008_FLO-PRO002_RNA002/fast5/999 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_A549_directRNA_replicate4_run1/999 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/106 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/107 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/108 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/112 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/116 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/117 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/118 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/123 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/124 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/126 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/131 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/137 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/138 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/142 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/157 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/160 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/172 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/175 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/179 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/190 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/191 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/193 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/194 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/197 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/201 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/203 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/215 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/218 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/221 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/222 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/225 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/228 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/229 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/234 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/239 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/240 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/243 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/248 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/252 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/258 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/259 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/26 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/263 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/266 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/267 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/268 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/270 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/271 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/272 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/274 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/28 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/284 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/285 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/286 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/288 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/29 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/294 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/295 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/297 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/300 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/300 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/304 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/304 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/308 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/308 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/311 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/311 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/316 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/316 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/318 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/318 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/320 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/320 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/321 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/321 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/322 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/322 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/327 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/327 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/330 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/330 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/332 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/332 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/335 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/335 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/338 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/338 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/34 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/341 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/341 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/345 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/345 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/346 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/346 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/347 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/347 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/348 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/348 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/352 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/352 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/357 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/357 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/36 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/362 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/362 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/363 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/363 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/364 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/364 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/369 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/369 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/37 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/371 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/371 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/375 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/375 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/376 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/376 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/384 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/384 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/386 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/386 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/392 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/392 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/394 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/394 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/400 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/400 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/402 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/402 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/403 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/403 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/41 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/413 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/413 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/415 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/415 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/417 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/417 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/42 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/420 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/420 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/425 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/425 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/427 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/427 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/433 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/433 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/434 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/434 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/435 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/435 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/437 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/437 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/438 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/438 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/439 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/439 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/442 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/442 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/444 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/444 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/445 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/445 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/448 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/448 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/449 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/449 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/452 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/452 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/456 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/456 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/457 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/457 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/459 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/459 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/462 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/462 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/465 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/465 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/476 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/476 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/482 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/482 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/49 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/50 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/55 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/56 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/60 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/68 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/69 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/71 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/73 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/75 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/78 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/81 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/82 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/83 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/85 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/88 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/90 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/91 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/96 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/97 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/mnt/projectsInstanceStore1/chenying/ena_upload/fast5/SGNex_H9_directRNA_replicate1_run1/20180817_0741_ES-WINSTON/fast5/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_H9_directRNA_replicate1_run1/99 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/11 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/12 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/13 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/14 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/15 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/16 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/17 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/18 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/19 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/20 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/21 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/22 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/23 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/7 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run1/9 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/100 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/101 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/102 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/103 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/104 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/105 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/106 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/107 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/108 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/109 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/11 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/110 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/111 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/112 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/113 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/114 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/115 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/116 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/117 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/118 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/119 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/12 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/120 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/121 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/122 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/123 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/124 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/125 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/126 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/127 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/128 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/129 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/13 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/130 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/131 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/132 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/133 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/134 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/135 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/136 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/137 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/138 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/139 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/14 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/140 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/141 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/142 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/143 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/144 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/145 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/146 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/147 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/148 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/149 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/15 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/150 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/151 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/152 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/153 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/154 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/155 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/156 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/157 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/158 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/159 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/16 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/160 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/161 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/162 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/163 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/164 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/165 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/166 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/167 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/168 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/169 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/17 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/170 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/171 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/172 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/173 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/174 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/175 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/176 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/177 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/178 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/179 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/18 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/180 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/181 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/182 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/183 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/184 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/185 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/186 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/187 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/188 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/189 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/19 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/190 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/191 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/192 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/193 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/194 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/195 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/196 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/197 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/198 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/199 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/20 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/200 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/21 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/22 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/23 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/24 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/25 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/26 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/27 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/28 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/29 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/30 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/31 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/32 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/33 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/34 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/35 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/36 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/37 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/38 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/39 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/40 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/41 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/42 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/43 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/44 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/45 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/46 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/47 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/48 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/49 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/50 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/51 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/52 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/53 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/54 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/55 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/56 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/57 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/58 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/59 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/60 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/61 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/62 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/63 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/64 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/65 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/66 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/67 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/68 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/69 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/7 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/70 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/71 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/72 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/73 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/74 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/75 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/76 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/77 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/78 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/79 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/80 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/81 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/82 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/83 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/84 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/85 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/86 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/87 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/88 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/89 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/9 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/90 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/91 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/92 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/93 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/94 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/95 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/96 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/97 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/98 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run2/99 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/100 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/101 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/102 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/103 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/104 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/105 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/106 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/107 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/108 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/109 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/11 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/110 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/111 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/112 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/113 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/114 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/115 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/116 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/117 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/118 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/119 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/12 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/120 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/121 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/122 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/123 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/124 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/125 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/126 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/127 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/128 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/129 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/13 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/130 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/131 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/132 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/133 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/134 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/135 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/136 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/137 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/138 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/139 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/14 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/140 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/141 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/142 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/143 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/144 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/145 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/146 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/147 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/148 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/149 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/15 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/150 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/151 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/152 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/153 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/154 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/155 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/156 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/157 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/158 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/159 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/16 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/160 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/161 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/162 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/163 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/164 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/165 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/166 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/167 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/168 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/169 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/17 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/170 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/171 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/172 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/173 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/174 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/175 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/176 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/177 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/178 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/179 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/18 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/180 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/181 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/182 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/183 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/184 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/185 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/186 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/187 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/188 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/189 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/19 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/190 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/191 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/192 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/193 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/194 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/195 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/196 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/197 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/198 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/199 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/20 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/200 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/201 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/202 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/203 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/204 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/205 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/206 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/207 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/208 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/209 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/21 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/210 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/211 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/212 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/213 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/214 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/215 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/216 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/217 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/218 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/219 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/22 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/220 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/221 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/222 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/223 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/224 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/225 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/226 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/227 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/228 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/229 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/23 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/230 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/231 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/232 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/233 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/234 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/235 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/236 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/237 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/238 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/239 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/24 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/240 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/241 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/242 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/243 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/244 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/245 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/246 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/247 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/248 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/249 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/25 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/250 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/251 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/252 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/253 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/254 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/255 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/256 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/257 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/258 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/259 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/26 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/260 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/261 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/262 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/263 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/264 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/265 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/266 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/267 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/268 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/269 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/27 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/270 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/271 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/272 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/273 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/274 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/275 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/276 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/277 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/278 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/279 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/28 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/280 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/281 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/282 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/283 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/284 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/285 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/286 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/287 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/288 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/289 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/29 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/290 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/291 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/292 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/293 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/294 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/30 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/31 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/32 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/33 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/34 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/35 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/36 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/37 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/38 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/39 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/40 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/41 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/42 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/43 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/44 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/45 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/46 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/47 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/48 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/49 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/50 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/51 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/52 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/53 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/54 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/55 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/56 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/57 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/58 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/59 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/60 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/61 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/62 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/63 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/64 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/65 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/66 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/67 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/68 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/69 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/7 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/70 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/71 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/72 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/73 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/74 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/75 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/76 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/77 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/78 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/79 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/80 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/81 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/82 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/83 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/84 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/85 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/86 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/87 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/88 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/89 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/9 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/90 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/91 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/92 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/93 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/94 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/95 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/96 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/97 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/98 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate1_run3/99 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/10 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/11 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/12 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/13 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/14 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/15 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/16 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/17 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/18 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/19 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/20 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/21 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/22 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/23 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/24 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/25 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/26 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/27 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/28 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/29 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/30 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/31 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/32 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/33 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/34 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/35 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/36 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/37 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/38 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/39 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/40 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/41 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/42 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/43 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/44 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/45 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/46 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/47 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/48 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/49 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/50 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/51 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/52 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/53 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/54 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/55 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/56 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/57 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/58 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/59 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/60 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/61 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/62 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/63 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/64 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/65 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/66 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/67 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/68 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/69 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/7 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/70 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/71 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/72 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/73 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/74 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/75 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/76 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/77 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/78 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/79 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/8 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/80 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/81 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/82 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/83 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/84 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/85 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/86 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/87 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/88 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/89 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/9 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/90 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/91 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/92 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/93 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/94 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/95 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/fast5/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run1/96 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/0 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/1 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/2 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/3 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/4 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/5 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/6 --filename_base batch_output --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/fast5/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/08-human-PRJEB44348/SGNex_Hct116_directRNA_replicate2_run2/7 --filename_base batch_output --batch_size 1000 --recursive &