/oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/0-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/0-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/10-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/10-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/11-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/11-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/12-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/12-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/13-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/13-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/14-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/14-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/15-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/15-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/16-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/16-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/17-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/17-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/18-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/18-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/19-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/19-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/1-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/1-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/20-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/20-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/21-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/21-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/22-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/22-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/23-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/23-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/24-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/24-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/24-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/24-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/27-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/27-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/28-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/28-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/29-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/29-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/2-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/2-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/30-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/30-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/31-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/31-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/32-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/32-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/33-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/33-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/34-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/34-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/35-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/35-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/36-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/36-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/37-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/37-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/38-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/38-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/39-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/39-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/3-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/40-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/40-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/41-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/41-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/42-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/42-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/43-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/43-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/44-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/44-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/45-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/45-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/46-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/46-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/47-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/47-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/48-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/48-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/49-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/49-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/4-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/4-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/50-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/50-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/51-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/51-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/52-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/52-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/53-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/53-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/54-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/54-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/55-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/55-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/56-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/56-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/57-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/57-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/58-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/58-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/59-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/59-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/5-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/5-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/60-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/60-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/61-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/61-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/62-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/62-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/63-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/63-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/64-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/64-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/65-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/65-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/66-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/66-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/67-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/67-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/6-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/6-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/7-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/7-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/8-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/8-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_0 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_1 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_2 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_3 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_4 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_5 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_6 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate1_run1/9-batch_output_7 -s SGNex_A549_directRNA_replicate1_run1/9-batch_output_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/0-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/0-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/0-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/0-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/100-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/100-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/100-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/100-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/100-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/100-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/100-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/100-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/101-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/101-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/101-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/101-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/101-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/101-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/101-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/101-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/102-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/102-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/102-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/102-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/102-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/102-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/102-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/102-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/103-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/103-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/103-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/103-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/103-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/103-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/103-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/103-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/104-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/104-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/104-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/104-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/104-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/104-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/104-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/104-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/105-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/105-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/105-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/105-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/105-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/105-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/105-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/105-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/106-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/106-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/106-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/106-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/106-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/106-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/106-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/106-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/107-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/107-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/107-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/107-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/107-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/107-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/107-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/107-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/108-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/108-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/108-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/108-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/108-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/108-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/108-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/108-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/109-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/109-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/109-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/109-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/109-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/109-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/109-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/109-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/10-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/10-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/10-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/10-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/10-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/10-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/10-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/10-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/110-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/110-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/110-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/110-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/110-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/110-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/110-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/110-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/111-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/111-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/111-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/111-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/111-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/111-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/111-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/111-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/112-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/112-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/112-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/112-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/112-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/112-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/112-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/112-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/113-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/113-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/113-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/113-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/113-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/113-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/113-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/113-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/114-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/114-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/114-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/114-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/114-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/114-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/114-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/114-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/115-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/115-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/115-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/115-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/115-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/115-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/115-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/115-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/116-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/116-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/116-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/116-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/116-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/116-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/116-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/116-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/117-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/117-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/117-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/117-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/117-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/117-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/117-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/117-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/118-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/118-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/118-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/118-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/118-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/118-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/118-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/118-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/119-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/119-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/119-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/119-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/119-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/119-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/119-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/119-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/11-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/11-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/11-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/11-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/120-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/120-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/120-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/120-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/120-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/120-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/120-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/120-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/121-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/121-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/121-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/121-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/121-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/121-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/121-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/121-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/122-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/122-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/122-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/122-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/122-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/122-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/122-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/122-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/123-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/123-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/123-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/123-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/123-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/123-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/123-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/123-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/124-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/124-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/124-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/124-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/124-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/124-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/124-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/124-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/125-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/125-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/125-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/125-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/125-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/125-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/125-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/125-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/126-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/126-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/126-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/126-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/126-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/126-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/126-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/126-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/127-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/127-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/127-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/127-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/127-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/127-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/127-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/127-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/128-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/128-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/128-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/128-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/128-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/128-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/128-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/128-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/129-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/129-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/129-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/129-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/129-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/129-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/129-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/129-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/12-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/12-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/12-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/12-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/130-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/130-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/130-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/130-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/130-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/130-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/130-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/130-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/131-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/131-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/131-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/131-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/131-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/131-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/131-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/131-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/132-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/132-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/132-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/132-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/132-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/132-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/132-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/132-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/133-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/133-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/133-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/133-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/133-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/133-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/133-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/133-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/134-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/134-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/134-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/134-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/134-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/134-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/134-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/134-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/135-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/135-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/135-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/135-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/135-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/135-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/135-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/135-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/136-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/136-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/136-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/136-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/136-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/136-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/136-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/136-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/137-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/137-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/137-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/137-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/137-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/137-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/137-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/137-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/138-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/138-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/138-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/138-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/138-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/138-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/138-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/138-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/139-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/139-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/139-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/139-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/139-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/139-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/139-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/139-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/13-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/13-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/13-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/13-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/13-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/13-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/140-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/140-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/140-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/140-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/140-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/140-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/140-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/140-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/141-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/141-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/141-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/141-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/141-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/141-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/141-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/141-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/142-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/142-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/142-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/142-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/142-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/142-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/142-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/142-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/143-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/143-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/143-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/143-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/143-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/143-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/143-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/143-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/144-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/144-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/144-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/144-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/144-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/144-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/144-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/144-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/145-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/145-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/145-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/145-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/145-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/145-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/145-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/145-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/146-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/146-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/146-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/146-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/146-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/146-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/146-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/146-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/147-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/147-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/147-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/147-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/147-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/147-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/147-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/147-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/148-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/148-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/148-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/148-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/148-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/148-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/148-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/148-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/149-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/149-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/149-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/149-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/149-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/149-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/149-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/149-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/14-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/14-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/14-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/14-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/14-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/14-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/150-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/150-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/150-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/150-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/150-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/150-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/150-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/150-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/151-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/151-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/151-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/151-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/151-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/151-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/151-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/151-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/152-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/152-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/152-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/152-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/152-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/152-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/152-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/152-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/153-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/153-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/153-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/153-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/153-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/153-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/153-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/153-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/154-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/154-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/154-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/154-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/154-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/154-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/154-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/154-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/155-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/155-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/155-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/155-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/155-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/155-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/155-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/155-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/156-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/156-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/156-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/156-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/156-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/156-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/156-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/156-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/157-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/157-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/157-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/157-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/157-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/157-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/157-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/157-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/158-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/158-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/158-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/158-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/158-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/158-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/158-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/158-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/159-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/159-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/159-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/159-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/159-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/159-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/159-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/159-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/15-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/15-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/15-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/15-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/160-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/160-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/160-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/160-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/160-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/160-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/160-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/160-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/161-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/161-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/161-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/161-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/161-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/161-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/161-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/161-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/162-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/162-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/162-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/162-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/162-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/162-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/162-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/162-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/163-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/163-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/163-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/163-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/163-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/163-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/163-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/163-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/164-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/164-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/164-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/164-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/164-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/164-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/164-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/164-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/165-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/165-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/165-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/165-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/165-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/165-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/165-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/165-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/166-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/166-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/166-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/166-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/166-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/166-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/166-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/166-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/167-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/167-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/16-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/16-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/16-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/16-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/16-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/16-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/17-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/17-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/17-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/17-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/17-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/17-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/18-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/18-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/18-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/18-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/18-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/18-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/19-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/19-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/19-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/19-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/19-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/19-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/1-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/1-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/1-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/1-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/20-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/20-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/20-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/20-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/21-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/21-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/21-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/21-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/22-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/22-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/22-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/22-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/22-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/23-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/23-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/23-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/23-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/23-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/23-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/23-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/24-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/24-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/24-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/24-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/24-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/24-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/24-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/24-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/25-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/25-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/25-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/25-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/25-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/25-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/25-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/25-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/26-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/26-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/26-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/26-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/26-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/26-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/26-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/26-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/27-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/27-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/27-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/27-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/27-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/27-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/27-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/27-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/28-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/28-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/28-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/28-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/28-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/28-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/28-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/28-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/29-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/29-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/29-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/29-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/29-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/29-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/29-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/29-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/2-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/2-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/2-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/2-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/30-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/30-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/30-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/30-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/30-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/30-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/30-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/30-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/31-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/31-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/31-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/31-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/31-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/31-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/31-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/31-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/32-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/32-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/32-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/32-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/32-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/32-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/32-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/32-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/33-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/33-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/33-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/33-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/33-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/33-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/33-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/33-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/34-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/34-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/34-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/34-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/34-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/34-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/34-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/34-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/35-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/35-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/35-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/35-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/35-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/35-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/35-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/35-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/36-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/36-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/36-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/36-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/36-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/36-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/36-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/36-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/37-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/37-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/38-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/38-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/38-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/38-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/38-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/38-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/38-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/38-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/39-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/39-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/39-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/39-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/39-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/39-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/39-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/39-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/3-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/3-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/3-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/3-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/40-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/40-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/40-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/40-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/40-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/40-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/40-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/40-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/41-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/41-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/41-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/41-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/41-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/41-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/41-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/41-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/42-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/42-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/42-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/42-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/42-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/42-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/42-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/42-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/43-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/43-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/43-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/43-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/43-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/43-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/43-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/43-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/44-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/44-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/44-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/44-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/44-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/44-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/44-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/44-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/45-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/45-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/45-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/45-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/45-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/45-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/45-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/45-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/46-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/46-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/46-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/46-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/46-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/46-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/46-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/46-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/47-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/47-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/47-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/47-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/47-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/47-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/47-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/47-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/48-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/48-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/48-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/48-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/48-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/48-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/48-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/48-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/49-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/49-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/49-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/49-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/49-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/49-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/49-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/49-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/4-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/4-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/4-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/4-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/50-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/50-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/50-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/50-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/50-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/50-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/50-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/50-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/51-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/51-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/51-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/51-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/51-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/51-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/51-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/51-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/52-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/52-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/52-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/52-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/52-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/52-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/52-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/52-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/53-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/53-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/53-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/53-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/53-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/53-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/53-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/53-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/54-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/54-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/54-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/54-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/54-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/54-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/54-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/54-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/55-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/55-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/55-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/55-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/55-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/55-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/55-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/55-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/56-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/56-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/56-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/56-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/56-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/56-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/56-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/56-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/57-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/57-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/57-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/57-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/57-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/57-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/57-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/57-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/58-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/58-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/58-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/58-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/58-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/58-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/58-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/58-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/59-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/59-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/59-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/59-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/59-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/59-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/59-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/59-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/5-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/5-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/5-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/5-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/60-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/60-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/60-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/60-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/60-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/60-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/60-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/60-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/61-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/61-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/61-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/61-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/61-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/61-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/61-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/61-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/62-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/62-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/62-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/62-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/62-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/62-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/62-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/62-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/63-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/63-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/63-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/63-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/63-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/63-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/63-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/63-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/64-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/64-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/64-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/64-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/64-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/64-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/64-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/64-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/65-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/65-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/65-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/65-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/65-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/65-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/65-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/65-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/66-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/66-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/66-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/66-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/66-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/66-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/66-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/66-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/67-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/67-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/67-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/67-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/67-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/67-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/67-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/67-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/68-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/68-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/68-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/68-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/68-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/68-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/68-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/68-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/69-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/69-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/69-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/69-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/69-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/69-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/69-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/69-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/6-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/6-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/6-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/6-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/70-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/70-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/70-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/70-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/70-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/70-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/70-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/70-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/71-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/71-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/71-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/71-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/71-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/71-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/71-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/71-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/72-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/72-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/72-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/72-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/72-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/72-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/72-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/72-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/73-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/73-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/73-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/73-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/73-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/73-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/73-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/73-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/74-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/74-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/74-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/74-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/74-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/74-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/74-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/74-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/75-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/75-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/75-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/75-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/75-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/75-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/75-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/75-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/76-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/76-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/76-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/76-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/76-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/76-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/76-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/76-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/77-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/77-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/77-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/77-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/77-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/77-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/77-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/77-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/78-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/78-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/78-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/78-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/78-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/78-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/78-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/78-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/79-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/79-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/79-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/79-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/79-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/79-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/79-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/79-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/7-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/7-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/7-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/7-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/7-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/7-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/7-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/80-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/80-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/80-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/80-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/80-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/80-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/80-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/80-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/81-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/81-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/81-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/81-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/81-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/81-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/81-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/81-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/82-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/82-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/82-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/82-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/82-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/82-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/82-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/82-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/83-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/83-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/83-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/83-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/83-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/83-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/83-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/83-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/84-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/84-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/84-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/84-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/84-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/84-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/84-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/84-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/85-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/85-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/85-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/85-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/85-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/85-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/85-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/85-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/86-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/86-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/86-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/86-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/86-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/86-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/86-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/86-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/87-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/87-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/87-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/87-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/87-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/87-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/87-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/87-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/88-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/88-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/88-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/88-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/88-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/88-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/88-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/88-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/89-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/89-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/89-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/89-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/89-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/89-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/89-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/89-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/8-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/8-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/8-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/8-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/8-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/8-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/8-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/8-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/90-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/90-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/90-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/90-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/90-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/90-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/90-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/90-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/91-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/91-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/91-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/91-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/91-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/91-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/91-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/91-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/92-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/92-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/92-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/92-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/92-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/92-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/92-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/92-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/93-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/93-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/93-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/93-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/93-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/93-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/93-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/93-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/94-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/94-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/94-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/94-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/94-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/94-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/94-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/94-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/95-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/95-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/95-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/95-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/95-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/95-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/95-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/95-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/96-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/96-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/96-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/96-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/96-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/96-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/96-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/96-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/97-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/97-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/97-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/97-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/97-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/97-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/97-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/97-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/98-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/98-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/98-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/98-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/98-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/98-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/98-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/98-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/99-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/99-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/99-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/99-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/99-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/99-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/99-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/99-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/9-batch_output_0 -s SGNex_H9_directRNA_replicate1_run1/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/9-batch_output_1 -s SGNex_H9_directRNA_replicate1_run1/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/9-batch_output_2 -s SGNex_H9_directRNA_replicate1_run1/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_H9_directRNA_replicate1_run1/9-batch_output_3 -s SGNex_H9_directRNA_replicate1_run1/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/10-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/13-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/14-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/16-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/17-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/18-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/19-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/22-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/22-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/22-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/23-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/7-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/8-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run1/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/100-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/101-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/102-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/103-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/104-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/105-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/106-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/107-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/108-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/109-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/10-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/110-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/111-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/112-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/113-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/114-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/115-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/116-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/117-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/118-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/119-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/120-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/121-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/122-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/123-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/124-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/125-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/126-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/127-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/128-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/129-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/130-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/131-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/132-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/133-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/134-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/135-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/136-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/137-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/138-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/139-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/13-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/140-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/141-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/142-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/143-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/144-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/145-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/146-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/147-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/148-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/149-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/14-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/150-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/151-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/152-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/153-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/154-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/155-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/156-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/157-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/158-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/159-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/160-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/161-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/162-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/163-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/164-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/165-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/166-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/167-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/168-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/169-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/16-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/170-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/171-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/172-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/173-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/174-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/175-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/176-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/177-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/178-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/179-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/17-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/180-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/181-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/182-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/183-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/184-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/185-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/186-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/187-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/188-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/189-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/18-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/190-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/191-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/192-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/193-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/194-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/195-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/196-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/197-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/198-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/199-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/199-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/19-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/200-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/200-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/200-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/200-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/200-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/200-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/22-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/23-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/25-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/25-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/26-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/27-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/28-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/28-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/28-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/28-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/28-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/28-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/29-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/30-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/31-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/32-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/32-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/32-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/32-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/32-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/32-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/33-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/34-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/35-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/36-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/37-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/38-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/39-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/40-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/41-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/42-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/43-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/44-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/45-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/46-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/47-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/48-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/49-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/50-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/51-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/52-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/53-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/54-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/55-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/56-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/57-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/58-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/59-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/60-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/61-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/62-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/63-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/64-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/65-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/66-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/67-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/68-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/69-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/70-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/71-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/72-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/73-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/74-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/75-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/76-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/77-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/78-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/79-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/7-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/80-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/81-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/82-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/83-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/84-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/85-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/86-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/87-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/88-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/89-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/8-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/90-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/91-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/92-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/93-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/94-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/95-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/96-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/97-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/98-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/99-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run2/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/105-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/106-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/107-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/108-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/109-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/110-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/111-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/112-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/113-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/114-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/115-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/116-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/117-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/118-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/119-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/120-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/121-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/122-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/123-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/124-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/125-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/126-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/127-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/128-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/129-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/130-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/131-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/132-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/133-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/134-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/135-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/136-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/137-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/138-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/139-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/13-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/140-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/141-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/142-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/143-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/144-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/145-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/146-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/147-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/148-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/149-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/14-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/150-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/151-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/152-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/153-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/154-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/154-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/154-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/154-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/154-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/154-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/155-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/155-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/155-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/155-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/155-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/155-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/156-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/156-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/156-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/156-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/156-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/156-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/157-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/157-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/157-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/157-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/157-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/157-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/158-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/158-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/158-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/158-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/158-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/158-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/159-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/160-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/161-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/162-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/163-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/164-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/165-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/166-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/167-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/168-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/169-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/16-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/170-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/171-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/172-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/173-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/174-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/175-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/176-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/177-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/178-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/179-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/17-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/180-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/181-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/182-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/183-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/184-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/185-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/186-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/187-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/188-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/189-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/18-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/190-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/191-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/192-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/193-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/194-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/195-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/196-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/197-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/198-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/199-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/19-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/200-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/201-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/202-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/203-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/204-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/205-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/206-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/207-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/208-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/209-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/210-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/211-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/212-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/213-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/214-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/215-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/216-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/217-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/218-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/219-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/220-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/221-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/222-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/223-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/224-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/225-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/226-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/227-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/228-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/229-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/22-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/230-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/231-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/232-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/233-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/234-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/235-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/236-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/237-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/238-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/239-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/23-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/240-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/241-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/242-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/243-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/244-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/245-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/246-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/247-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/248-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/249-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/24-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/250-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/251-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/252-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/253-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/254-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/255-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/256-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/257-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/258-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/259-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/25-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/260-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/261-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/262-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/263-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/264-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/265-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/266-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/267-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/268-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/269-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/26-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/270-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/271-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/272-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/273-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/274-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/275-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/276-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/277-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/278-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/279-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/27-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/280-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/281-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/282-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/283-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/284-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/285-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/286-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/287-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/288-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/289-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/28-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/290-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/291-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/292-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/293-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/293-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/293-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/293-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/294-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/294-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/294-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/294-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/294-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/294-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/29-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/30-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/31-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/32-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/33-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/34-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/35-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/36-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/37-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/38-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/39-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/40-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/41-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/42-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/43-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/44-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/45-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/46-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/47-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/48-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/49-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/50-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/51-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/52-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/53-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/54-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/55-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/56-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/57-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/58-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/59-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/60-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/61-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/62-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/63-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/64-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/65-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/66-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/67-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/68-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/69-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/70-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/71-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/72-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/73-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/74-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/75-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/76-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/77-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/78-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/79-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/7-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/80-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/81-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/82-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/83-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/84-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/85-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/86-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/87-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/88-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/89-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/8-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/90-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/91-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/92-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/93-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/94-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/95-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/96-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/97-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/98-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/99-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_0 -s SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_1 -s SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_2 -s SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_3 -s SGNex_Hct116_directRNA_replicate1_run3/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/10-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/13-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/13-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/14-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/14-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/16-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/16-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/17-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/17-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/18-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/18-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/19-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/19-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/22-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/23-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/24-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/25-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/26-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/27-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/28-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/29-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/30-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/31-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/32-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/33-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/34-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/35-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/36-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/37-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/38-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/39-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/40-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/41-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/42-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/43-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/44-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/45-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/46-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/47-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/48-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/49-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/50-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/51-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/52-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/53-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/54-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/55-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/56-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/57-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/58-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/59-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/60-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/61-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/62-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/63-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/64-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/65-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/66-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/67-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/68-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/69-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/70-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/71-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/72-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/73-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/74-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/75-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/76-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/77-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/78-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/79-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/7-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/80-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/81-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/82-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/83-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/84-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/85-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/86-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/87-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/88-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/89-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/8-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/90-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/91-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/92-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/93-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/94-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/95-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/95-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/96-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/96-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/96-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/96-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run1/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run2/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run2/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run2/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run2/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run2/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_1 -s SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_2 -s SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_3 -s SGNex_Hct116_directRNA_replicate2_run2/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/6-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate2_run2/7-batch_output_0 -s SGNex_Hct116_directRNA_replicate2_run2/7-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/4f128f30d8e1d613c3f5204b914f67830bb9276f_0 -s SGNex_Hek293T_directRNA_replicate4_run1/4f128f30d8e1d613c3f5204b914f67830bb9276f_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_0 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_10 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_11 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_12 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_13 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_14 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_15 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_16 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_17 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_18 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_19 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_1 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_20 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_21 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_22 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_23 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_24 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_25 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_26 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_27 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_28 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_29 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_2 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_30 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_31 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_32 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_33 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_34 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_35 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_36 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_37 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_38 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_39 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_3 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_40 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_41 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_42 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_43 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_44 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_45 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_46 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_47 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_48 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_49 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_4 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_50 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_51 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_52 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_53 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_54 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_55 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_56 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_57 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_58 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_59 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_5 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_60 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_61 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_62 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_6 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_7 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_8 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_9 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_4f128f30d8e1d613c3f5204b914f67830bb9276f_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/_771a38df9d9b678a485923dc79a6a5d5d59c115c_0 -s SGNex_Hek293T_directRNA_replicate4_run1/_771a38df9d9b678a485923dc79a6a5d5d59c115c_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_0 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_10 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_11 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_12 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_13 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_14 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_15 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_16 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_17 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_18 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_19 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_1 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_20 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_21 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_22 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_23 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_24 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_25 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_26 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_27 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_28 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_29 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_2 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_30 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_31 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_32 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_33 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_34 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_35 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_36 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_37 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_38 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_39 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_3 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_40 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_4 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_5 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_6 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_7 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_8 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_9 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_771a38df9d9b678a485923dc79a6a5d5d59c115c_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_0 -s SGNex_Hek293T_directRNA_replicate4_run1/_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_0 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_1 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_2 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_3 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_4 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_5 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_6 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_7 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_8 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_9 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_6250ed52a40a7a70570d4d6f9db4dd00ea40f485_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_0 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_1 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_2 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_3 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_e9dce33cf98e372a4f6d3f839b59a70a8f7ae3bb_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_0 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_10 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_11 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_12 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_1 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_2 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_3 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_4 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_5 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_6 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_7 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_8 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_9 -s SGNex_Hek293T_directRNA_replicate4_run1/FAK01563_592a61243d7421ac90e6a183645d5dbf16fc888f_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/_32eb599f220d25917ff5a2db82be47a33694fdce_0 -s SGNex_IM95_directRNA_replicate1_run1/_32eb599f220d25917ff5a2db82be47a33694fdce_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_0 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_10 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_11 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_12 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_13 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_14 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_15 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_16 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_17 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_18 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_19 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_1 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_20 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_21 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_22 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_23 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_24 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_25 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_26 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_27 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_28 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_29 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_2 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_30 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_31 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_32 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_33 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_34 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_35 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_36 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_37 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_38 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_39 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_3 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_40 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_41 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_42 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_43 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_44 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_45 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_46 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_47 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_48 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_49 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_4 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_5 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_6 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_7 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_8 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_9 -s SGNex_IM95_directRNA_replicate1_run1/FAK24880_32eb599f220d25917ff5a2db82be47a33694fdce_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_0 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_100 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_101 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_102 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_103 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_104 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_105 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_106 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_107 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_108 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_109 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_10 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_110 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_111 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_112 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_113 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_114 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_115 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_116 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_117 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_118 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_119 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_11 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_120 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_121 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_122 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_123 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_124 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_125 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_126 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_127 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_128 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_129 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_12 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_130 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_131 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_132 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_133 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_134 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_135 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_136 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_137 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_138 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_139 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_13 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_140 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_141 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_142 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_143 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_144 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_145 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_146 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_147 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_148 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_149 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_14 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_150 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_151 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_152 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_153 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_154 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_155 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_156 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_157 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_158 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_159 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_15 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_160 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_161 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_162 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_163 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_164 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_165 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_166 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_167 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_168 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_169 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_16 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_170 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_171 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_172 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_173 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_174 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_175 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_176 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_177 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_178 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_179 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_17 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_180 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_181 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_182 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_183 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_184 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_185 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_186 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_187 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_188 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_189 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_18 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_190 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_191 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_192 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_193 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_194 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_195 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_196 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_197 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_198 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_199 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_19 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_1 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_200 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_201 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_202 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_203 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_204 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_205 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_206 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_207 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_208 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_209 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_20 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_210 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_211 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_212 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_213 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_214 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_215 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_216 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_217 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_218 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_219 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_21 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_220 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_221 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_222 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_223 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_224 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_225 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_226 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_227 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_228 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_229 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_22 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_230 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_231 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_232 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_233 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_234 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_235 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_236 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_237 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_238 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_239 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_23 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_240 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_241 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_242 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_243 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_244 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_245 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_246 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_247 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_248 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_249 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_24 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_250 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_251 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_252 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_253 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_254 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_255 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_256 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_257 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_258 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_259 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_25 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_260 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_261 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_262 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_263 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_264 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_265 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_266 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_267 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_268 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_269 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_26 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_270 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_271 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_272 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_273 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_274 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_275 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_276 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_277 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_278 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_279 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_27 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_280 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_281 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_282 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_283 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_284 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_285 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_286 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_287 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_288 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_289 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_28 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_290 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_291 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_292 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_293 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_294 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_295 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_296 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_297 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_298 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_299 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_29 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_2 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_300 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_301 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_302 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_303 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_304 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_305 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_306 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_307 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_308 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_309 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_30 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_310 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_311 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_312 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_313 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_31 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_32 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_33 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_34 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_35 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_36 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_37 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_38 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_39 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_3 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_40 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_41 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_42 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_43 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_44 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_45 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_46 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_47 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_48 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_49 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_4 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_50 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_51 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_52 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_53 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_54 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_55 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_56 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_57 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_58 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_59 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_5 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_60 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_61 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_62 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_63 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_64 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_65 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_66 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_67 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_68 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_69 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_6 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_70 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_71 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_72 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_73 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_74 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_75 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_76 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_77 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_78 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_79 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_7 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_80 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_81 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_82 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_83 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_84 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_85 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_86 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_87 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_88 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_89 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_8 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_90 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_91 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_92 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_93 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_94 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_95 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_96 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_97 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_98 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_99 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_9 -s SGNex_A549_directRNA_replicate6_run1/FAL40111_pass_668c98e9_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_0 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_100 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_101 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_102 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_103 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_104 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_105 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_106 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_107 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_108 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_109 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_10 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_110 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_111 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_112 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_113 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_114 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_115 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_116 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_117 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_118 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_119 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_11 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_120 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_121 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_122 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_123 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_124 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_125 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_126 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_127 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_128 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_129 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_12 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_130 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_131 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_132 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_133 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_134 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_135 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_136 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_137 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_138 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_139 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_13 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_140 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_141 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_142 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_143 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_144 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_145 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_146 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_147 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_148 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_149 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_14 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_150 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_151 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_152 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_153 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_154 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_155 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_156 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_157 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_158 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_159 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_15 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_160 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_161 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_162 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_163 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_164 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_165 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_166 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_167 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_168 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_169 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_16 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_170 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_171 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_172 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_173 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_174 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_175 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_176 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_177 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_178 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_179 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_17 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_180 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_181 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_182 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_183 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_184 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_185 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_186 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_187 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_188 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_189 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_18 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_190 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_191 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_192 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_193 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_194 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_195 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_196 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_197 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_198 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_199 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_19 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_1 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_200 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_201 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_202 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_203 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_204 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_205 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_206 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_207 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_208 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_209 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_20 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_210 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_211 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_212 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_213 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_214 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_215 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_216 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_217 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_218 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_219 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_21 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_220 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_221 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_222 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_223 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_224 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_225 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_226 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_227 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_228 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_229 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_22 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_230 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_231 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_232 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_233 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_234 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_235 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_236 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_237 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_238 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_239 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_23 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_240 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_241 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_242 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_243 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_244 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_245 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_246 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_24 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_25 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_26 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_27 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_28 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_29 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_2 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_30 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_31 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_32 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_33 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_34 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_35 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_36 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_37 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_38 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_39 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_3 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_40 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_41 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_42 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_43 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_44 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_45 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_46 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_47 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_48 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_49 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_4 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_50 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_51 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_52 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_53 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_54 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_55 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_56 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_57 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_58 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_59 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_5 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_60 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_61 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_62 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_63 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_64 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_65 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_66 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_67 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_68 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_69 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_6 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_70 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_71 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_72 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_73 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_74 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_75 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_76 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_77 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_78 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_79 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_7 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_80 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_81 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_82 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_83 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_84 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_85 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_86 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_87 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_88 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_89 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_8 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_90 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_91 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_92 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_93 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_94 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_95 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_96 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_97 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_98 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_99 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_9 -s SGNex_Hct116_directRNA_replicate3_run1/FAK31730_4936b1de5d27d1d79c6c049a4d56dc7de7552dbd_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_0 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_100 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_101 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_102 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_103 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_104 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_105 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_106 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_107 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_108 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_109 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_10 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_110 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_111 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_112 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_113 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_114 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_115 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_116 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_117 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_118 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_119 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_11 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_120 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_121 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_122 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_123 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_124 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_125 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_126 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_127 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_128 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_129 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_12 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_130 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_131 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_132 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_133 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_134 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_135 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_136 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_137 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_138 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_139 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_13 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_140 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_141 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_142 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_143 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_144 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_145 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_146 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_147 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_148 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_149 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_14 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_150 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_151 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_152 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_153 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_154 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_155 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_156 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_157 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_158 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_159 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_15 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_160 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_161 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_162 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_163 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_164 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_165 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_166 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_167 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_168 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_169 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_16 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_170 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_171 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_172 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_173 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_174 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_175 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_176 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_177 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_178 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_179 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_17 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_180 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_181 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_182 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_183 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_184 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_185 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_186 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_187 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_188 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_189 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_18 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_190 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_191 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_192 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_193 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_194 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_195 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_196 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_197 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_198 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_199 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_19 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_1 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_200 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_201 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_202 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_203 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_204 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_205 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_206 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_207 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_208 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_209 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_20 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_210 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_211 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_212 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_213 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_214 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_215 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_216 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_217 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_218 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_219 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_21 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_220 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_221 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_222 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_223 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_224 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_225 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_226 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_227 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_228 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_229 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_22 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_230 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_231 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_232 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_233 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_234 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_235 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_236 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_237 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_238 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_239 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_23 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_240 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_241 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_242 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_243 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_244 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_245 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_246 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_247 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_248 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_249 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_24 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_250 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_251 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_252 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_253 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_25 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_26 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_27 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_28 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_29 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_2 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_30 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_31 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_32 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_33 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_34 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_35 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_36 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_37 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_38 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_39 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_3 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_40 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_41 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_42 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_43 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_44 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_45 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_46 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_47 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_48 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_49 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_4 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_50 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_51 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_52 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_53 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_54 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_55 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_56 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_57 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_58 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_59 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_5 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_60 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_61 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_62 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_63 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_64 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_65 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_66 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_67 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_68 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_69 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_6 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_70 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_71 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_72 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_73 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_74 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_75 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_76 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_77 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_78 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_79 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_7 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_80 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_81 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_82 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_83 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_84 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_85 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_86 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_87 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_88 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_89 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_8 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_90 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_91 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_92 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_93 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_94 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_95 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_96 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_97 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_98 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_99 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_9 -s SGNex_Hct116_directRNA_replicate3_run4/FAL39689_pass_c1c67841_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_0 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_100 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_101 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_102 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_103 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_104 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_105 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_106 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_107 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_108 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_109 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_10 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_110 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_111 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_112 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_113 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_114 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_115 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_116 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_117 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_118 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_119 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_11 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_120 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_121 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_122 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_123 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_124 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_125 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_126 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_127 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_128 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_129 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_12 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_130 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_131 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_132 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_133 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_134 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_135 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_136 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_137 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_138 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_139 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_13 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_140 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_141 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_142 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_143 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_144 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_145 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_146 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_147 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_148 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_149 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_14 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_150 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_151 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_152 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_153 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_154 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_155 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_156 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_157 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_158 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_159 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_15 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_160 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_161 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_162 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_163 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_164 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_165 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_166 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_167 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_168 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_169 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_16 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_170 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_171 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_172 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_173 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_174 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_175 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_176 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_177 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_178 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_179 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_17 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_180 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_181 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_182 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_183 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_184 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_185 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_186 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_187 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_188 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_189 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_18 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_190 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_191 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_192 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_193 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_194 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_195 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_196 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_197 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_198 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_199 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_19 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_1 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_200 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_201 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_202 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_203 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_204 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_205 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_206 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_207 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_208 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_209 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_20 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_210 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_211 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_212 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_213 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_214 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_215 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_216 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_217 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_218 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_219 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_21 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_220 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_221 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_222 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_223 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_224 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_225 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_226 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_227 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_228 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_229 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_22 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_230 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_231 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_232 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_233 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_234 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_235 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_236 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_237 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_238 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_239 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_23 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_240 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_241 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_242 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_243 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_244 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_245 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_246 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_247 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_248 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_249 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_24 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_250 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_251 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_252 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_253 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_254 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_255 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_256 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_257 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_258 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_259 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_25 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_260 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_261 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_262 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_263 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_264 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_265 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_266 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_267 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_268 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_269 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_26 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_270 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_271 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_272 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_273 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_274 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_275 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_276 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_277 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_278 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_279 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_27 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_280 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_281 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_282 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_283 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_284 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_285 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_286 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_287 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_288 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_289 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_28 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_290 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_291 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_292 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_293 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_294 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_295 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_296 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_297 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_298 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_299 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_29 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_2 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_300 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_301 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_302 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_303 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_304 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_305 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_306 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_307 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_308 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_309 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_30 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_310 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_311 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_312 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_313 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_314 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_315 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_316 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_317 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_318 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_319 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_31 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_320 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_321 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_322 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_323 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_324 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_325 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_326 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_327 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_328 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_329 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_32 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_330 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_331 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_332 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_333 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_334 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_335 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_336 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_337 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_338 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_339 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_33 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_340 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_341 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_342 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_343 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_344 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_345 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_346 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_347 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_348 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_349 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_34 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_350 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_351 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_352 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_353 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_354 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_355 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_356 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_357 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_358 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_359 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_35 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_360 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_361 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_362 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_363 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_364 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_365 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_366 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_367 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_368 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_369 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_36 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_370 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_371 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_372 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_373 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_374 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_375 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_376 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_377 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_378 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_379 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_37 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_380 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_381 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_382 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_383 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_384 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_385 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_386 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_387 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_388 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_389 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_38 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_390 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_391 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_392 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_393 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_394 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_395 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_396 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_397 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_398 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_399 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_39 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_3 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_400 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_401 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_402 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_403 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_404 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_405 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_406 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_407 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_408 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_409 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_40 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_410 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_411 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_412 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_413 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_414 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_415 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_416 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_417 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_418 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_41 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_42 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_43 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_44 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_45 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_46 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_47 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_48 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_49 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_4 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_50 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_51 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_52 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_53 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_54 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_55 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_56 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_57 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_58 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_59 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_5 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_60 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_61 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_62 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_63 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_64 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_65 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_66 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_67 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_68 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_69 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_6 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_70 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_71 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_72 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_73 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_74 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_75 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_76 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_77 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_78 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_79 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_7 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_80 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_81 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_82 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_83 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_84 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_85 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_86 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_87 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_88 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_89 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_8 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_90 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_91 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_92 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_93 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_94 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_95 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_96 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_97 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_98 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_99 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_9 -s SGNex_Hct116_directRNA_replicate4_run3/FAL40325_pass_a9499096_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_0 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_100 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_101 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_102 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_103 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_104 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_105 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_106 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_107 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_108 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_109 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_10 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_110 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_111 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_112 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_113 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_114 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_115 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_116 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_117 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_118 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_119 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_11 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_120 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_121 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_122 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_123 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_124 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_125 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_126 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_127 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_128 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_129 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_12 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_130 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_131 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_132 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_133 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_134 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_135 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_136 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_137 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_138 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_139 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_13 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_140 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_141 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_142 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_143 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_144 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_145 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_146 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_147 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_148 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_149 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_14 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_150 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_151 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_152 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_153 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_154 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_155 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_156 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_157 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_158 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_159 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_15 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_160 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_161 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_162 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_163 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_164 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_165 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_166 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_167 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_168 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_169 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_16 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_170 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_171 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_172 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_173 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_174 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_175 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_176 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_177 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_178 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_179 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_17 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_180 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_181 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_182 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_183 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_184 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_185 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_186 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_187 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_188 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_189 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_18 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_190 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_191 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_192 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_193 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_194 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_195 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_196 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_197 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_198 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_199 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_19 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_1 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_200 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_201 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_202 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_203 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_204 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_205 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_206 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_207 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_208 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_209 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_20 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_210 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_211 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_212 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_213 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_214 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_215 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_216 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_217 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_218 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_219 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_21 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_220 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_221 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_222 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_223 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_224 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_225 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_226 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_227 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_228 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_229 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_22 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_230 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_231 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_232 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_233 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_234 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_235 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_236 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_237 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_238 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_239 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_23 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_240 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_241 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_242 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_243 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_244 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_245 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_246 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_247 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_248 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_249 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_24 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_250 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_251 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_252 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_253 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_254 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_255 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_256 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_257 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_258 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_259 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_25 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_260 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_261 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_262 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_263 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_264 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_265 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_266 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_267 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_268 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_269 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_26 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_270 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_271 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_272 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_273 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_274 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_275 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_276 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_277 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_278 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_279 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_27 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_280 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_281 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_282 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_283 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_284 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_285 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_286 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_287 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_288 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_289 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_28 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_290 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_291 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_292 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_293 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_294 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_295 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_296 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_297 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_298 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_299 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_29 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_2 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_300 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_301 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_302 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_303 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_304 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_305 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_306 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_307 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_308 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_309 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_30 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_310 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_311 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_312 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_313 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_314 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_315 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_316 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_317 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_318 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_319 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_31 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_320 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_321 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_322 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_323 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_324 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_325 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_326 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_327 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_328 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_329 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_32 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_330 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_331 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_332 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_333 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_334 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_335 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_336 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_337 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_338 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_339 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_33 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_340 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_341 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_342 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_343 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_344 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_345 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_346 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_347 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_348 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_34 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_35 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_36 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_37 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_38 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_39 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_3 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_40 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_41 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_42 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_43 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_44 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_45 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_46 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_47 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_48 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_49 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_4 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_50 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_51 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_52 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_53 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_54 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_55 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_56 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_57 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_58 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_59 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_5 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_60 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_61 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_62 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_63 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_64 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_65 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_66 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_67 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_68 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_69 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_6 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_70 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_71 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_72 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_73 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_74 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_75 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_76 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_77 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_78 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_79 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_7 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_80 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_81 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_82 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_83 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_84 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_85 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_86 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_87 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_88 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_89 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_8 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_90 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_91 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_92 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_93 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_94 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_95 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_96 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_97 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_98 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_99 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_9 -s SGNex_Hek293T_directRNA_replicate3_run1/FAK29000_a52dfa22ddf19e92e6f49817dc8a9ec9ea76a0ca_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_0 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_100 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_101 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_102 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_103 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_104 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_105 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_106 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_107 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_108 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_109 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_10 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_110 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_111 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_112 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_113 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_114 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_115 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_116 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_117 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_118 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_119 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_11 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_120 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_121 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_122 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_123 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_124 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_125 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_126 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_127 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_128 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_129 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_12 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_130 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_131 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_132 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_133 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_134 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_135 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_136 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_137 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_138 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_139 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_13 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_140 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_141 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_142 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_143 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_144 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_145 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_146 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_147 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_148 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_149 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_14 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_150 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_151 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_152 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_153 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_154 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_155 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_156 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_157 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_158 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_159 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_15 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_160 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_161 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_162 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_163 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_164 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_165 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_166 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_167 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_168 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_169 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_16 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_170 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_171 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_172 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_173 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_174 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_175 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_176 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_177 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_178 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_179 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_17 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_180 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_181 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_182 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_183 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_184 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_185 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_186 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_187 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_188 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_189 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_18 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_190 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_191 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_192 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_193 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_194 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_195 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_196 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_197 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_198 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_199 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_19 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_1 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_200 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_201 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_202 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_203 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_204 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_205 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_206 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_207 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_208 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_209 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_20 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_210 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_211 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_212 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_213 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_214 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_215 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_216 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_217 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_218 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_219 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_21 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_220 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_221 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_222 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_223 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_224 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_225 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_226 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_227 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_228 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_229 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_22 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_230 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_231 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_232 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_233 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_234 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_235 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_236 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_237 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_238 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_239 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_23 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_240 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_241 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_242 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_243 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_244 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_245 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_246 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_247 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_248 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_249 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_24 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_250 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_251 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_252 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_253 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_254 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_255 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_256 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_257 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_258 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_259 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_25 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_260 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_261 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_262 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_263 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_264 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_265 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_266 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_267 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_268 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_269 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_26 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_270 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_271 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_272 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_273 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_274 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_275 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_276 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_277 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_278 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_279 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_27 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_280 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_281 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_282 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_283 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_284 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_285 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_286 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_287 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_288 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_289 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_28 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_290 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_291 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_292 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_293 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_294 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_295 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_296 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_297 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_298 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_299 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_29 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_2 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_300 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_301 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_302 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_303 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_304 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_305 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_306 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_307 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_308 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_309 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_30 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_310 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_311 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_312 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_313 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_314 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_315 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_316 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_317 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_318 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_319 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_31 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_320 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_321 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_322 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_323 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_324 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_325 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_326 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_327 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_328 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_329 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_32 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_330 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_331 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_332 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_333 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_334 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_335 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_336 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_337 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_338 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_339 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_33 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_340 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_341 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_342 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_343 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_344 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_345 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_346 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_347 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_348 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_349 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_34 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_350 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_351 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_352 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_353 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_354 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_355 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_356 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_357 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_358 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_359 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_35 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_360 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_361 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_362 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_363 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_364 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_365 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_366 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_367 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_368 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_369 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_36 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_370 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_371 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_372 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_373 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_374 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_375 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_376 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_377 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_378 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_37 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_38 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_39 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_3 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_40 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_41 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_42 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_43 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_44 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_45 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_46 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_47 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_48 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_49 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_4 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_50 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_51 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_52 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_53 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_54 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_55 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_56 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_57 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_58 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_59 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_5 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_60 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_61 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_62 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_63 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_64 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_65 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_66 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_67 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_68 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_69 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_6 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_70 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_71 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_72 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_73 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_74 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_75 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_76 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_77 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_78 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_79 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_7 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_80 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_81 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_82 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_83 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_84 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_85 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_86 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_87 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_88 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_89 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_8 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_90 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_91 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_92 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_93 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_94 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_95 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_96 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_97 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_98 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_99 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_9 -s SGNex_HepG2_directRNA_replicate6_run1/FAL86579_pass_69b5187d_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_0 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_100 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_101 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_102 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_103 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_104 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_105 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_106 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_107 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_108 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_109 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_10 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_110 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_111 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_112 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_113 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_114 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_115 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_116 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_117 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_118 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_119 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_11 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_120 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_121 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_122 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_123 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_124 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_125 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_126 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_127 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_128 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_129 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_12 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_130 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_131 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_132 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_133 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_134 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_135 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_136 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_137 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_138 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_139 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_13 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_140 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_141 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_142 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_143 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_144 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_145 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_146 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_147 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_148 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_149 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_14 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_150 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_151 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_152 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_153 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_154 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_155 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_156 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_157 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_158 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_159 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_15 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_160 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_161 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_162 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_163 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_164 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_165 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_166 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_167 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_168 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_169 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_16 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_170 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_171 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_172 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_173 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_174 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_175 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_176 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_177 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_178 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_179 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_17 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_180 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_181 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_182 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_183 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_184 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_185 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_186 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_187 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_188 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_189 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_18 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_190 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_191 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_192 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_193 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_194 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_195 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_196 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_197 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_198 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_199 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_19 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_1 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_200 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_201 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_202 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_203 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_204 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_205 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_206 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_207 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_208 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_209 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_20 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_210 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_211 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_212 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_21 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_22 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_23 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_24 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_25 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_26 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_27 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_28 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_29 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_2 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_30 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_31 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_32 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_33 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_34 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_35 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_36 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_37 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_38 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_39 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_3 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_40 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_41 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_42 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_43 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_44 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_45 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_46 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_47 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_48 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_49 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_4 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_50 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_51 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_52 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_53 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_54 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_55 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_56 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_57 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_58 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_59 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_5 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_60 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_61 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_62 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_63 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_64 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_65 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_66 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_67 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_68 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_69 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_6 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_70 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_71 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_72 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_73 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_74 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_75 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_76 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_77 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_78 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_79 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_7 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_80 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_81 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_82 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_83 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_84 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_85 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_86 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_87 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_88 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_89 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_8 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_90 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_91 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_92 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_93 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_94 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_95 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_96 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_97 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_98 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_99 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_9 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_0 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_100 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_101 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_102 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_103 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_104 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_105 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_106 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_107 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_108 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_109 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_10 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_110 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_111 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_112 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_113 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_114 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_115 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_116 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_117 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_118 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_119 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_11 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_120 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_121 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_122 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_123 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_124 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_125 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_126 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_127 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_128 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_129 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_12 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_130 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_131 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_132 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_133 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_134 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_135 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_136 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_137 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_138 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_139 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_13 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_140 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_141 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_142 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_143 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_144 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_145 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_146 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_147 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_148 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_149 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_14 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_150 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_151 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_152 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_153 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_154 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_155 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_156 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_157 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_158 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_159 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_15 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_160 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_161 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_162 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_163 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_164 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_165 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_166 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_167 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_168 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_169 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_16 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_170 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_171 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_172 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_173 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_174 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_175 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_176 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_177 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_178 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_179 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_17 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_180 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_181 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_182 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_183 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_184 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_185 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_186 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_187 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_188 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_189 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_18 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_190 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_191 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_192 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_193 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_194 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_195 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_196 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_197 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_198 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_199 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_19 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_1 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_200 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_201 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_202 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_203 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_204 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_205 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_206 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_207 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_208 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_209 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_20 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_210 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_211 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_212 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_213 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_214 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_215 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_216 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_217 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_218 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_219 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_21 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_220 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_221 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_222 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_223 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_224 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_225 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_226 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_227 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_228 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_22 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_23 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_24 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_25 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_26 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_27 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_28 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_29 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_2 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_30 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_31 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_32 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_33 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_34 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_35 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_36 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_37 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_38 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_39 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_3 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_40 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_41 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_42 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_43 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_44 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_45 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_46 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_47 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_48 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_49 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_4 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_50 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_51 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_52 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_53 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_54 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_55 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_56 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_57 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_58 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_59 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_5 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_60 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_61 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_62 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_63 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_64 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_65 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_66 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_67 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_68 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_69 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_6 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_70 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_71 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_72 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_73 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_74 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_75 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_76 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_77 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_78 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_79 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_7 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_80 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_81 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_82 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_83 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_84 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_85 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_86 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_87 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_88 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_89 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_8 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_90 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_91 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_92 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_93 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_94 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_95 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_96 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_97 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_98 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_99 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_9 -s SGNex_K562_directRNA_replicate4_run1/FAK41427_7e18096bb5bd398001ef6b97158b09d5f52c1050_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_0 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_100 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_101 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_102 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_103 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_104 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_105 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_106 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_107 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_108 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_109 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_10 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_110 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_111 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_112 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_113 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_114 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_115 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_116 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_117 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_118 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_119 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_11 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_120 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_121 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_122 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_123 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_124 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_125 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_126 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_127 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_128 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_129 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_12 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_130 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_131 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_132 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_133 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_134 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_135 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_136 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_137 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_138 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_139 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_13 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_140 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_141 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_142 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_143 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_144 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_145 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_146 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_147 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_148 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_149 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_14 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_150 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_151 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_152 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_153 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_154 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_155 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_156 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_157 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_158 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_159 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_15 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_160 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_161 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_162 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_163 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_164 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_165 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_166 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_167 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_168 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_169 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_16 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_170 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_171 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_172 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_173 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_174 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_175 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_176 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_177 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_178 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_179 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_17 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_180 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_181 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_182 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_183 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_184 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_185 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_186 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_187 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_188 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_189 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_18 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_190 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_191 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_192 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_193 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_194 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_195 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_196 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_197 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_198 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_199 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_19 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_1 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_200 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_201 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_202 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_203 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_204 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_205 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_206 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_207 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_208 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_209 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_20 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_210 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_211 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_212 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_21 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_22 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_23 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_24 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_25 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_26 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_27 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_28 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_29 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_2 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_30 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_31 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_32 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_33 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_34 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_35 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_36 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_37 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_38 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_39 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_3 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_40 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_41 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_42 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_43 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_44 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_45 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_46 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_47 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_48 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_49 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_4 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_50 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_51 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_52 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_53 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_54 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_55 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_56 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_57 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_58 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_59 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_5 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_60 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_61 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_62 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_63 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_64 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_65 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_66 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_67 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_68 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_69 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_6 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_70 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_71 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_72 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_73 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_74 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_75 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_76 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_77 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_78 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_79 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_7 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_80 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_81 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_82 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_83 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_84 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_85 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_86 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_87 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_88 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_89 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_8 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_90 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_91 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_92 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_93 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_94 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_95 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_96 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_97 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_98 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_99 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_9 -s SGNex_K562_directRNA_replicate5_run1/FAK40513_b8fb64af07218b8d38d1a1eacf5c3bd9da14fd66_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_0 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_100 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_101 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_102 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_103 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_104 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_105 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_106 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_107 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_108 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_109 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_10 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_110 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_111 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_112 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_113 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_114 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_115 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_116 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_117 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_118 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_119 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_11 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_120 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_121 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_122 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_123 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_124 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_125 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_126 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_127 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_128 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_129 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_12 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_130 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_131 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_132 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_133 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_134 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_135 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_136 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_137 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_138 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_139 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_13 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_140 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_141 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_142 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_143 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_144 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_145 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_146 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_147 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_148 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_149 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_14 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_150 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_151 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_152 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_153 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_154 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_155 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_156 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_157 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_158 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_159 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_15 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_160 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_161 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_162 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_163 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_164 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_165 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_166 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_167 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_168 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_169 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_16 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_170 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_171 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_172 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_173 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_174 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_175 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_176 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_177 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_178 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_179 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_17 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_180 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_181 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_182 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_183 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_184 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_185 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_186 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_187 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_188 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_189 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_18 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_190 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_191 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_192 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_193 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_194 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_195 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_196 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_197 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_198 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_199 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_19 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_1 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_200 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_201 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_202 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_203 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_204 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_205 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_206 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_207 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_208 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_209 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_20 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_210 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_211 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_212 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_213 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_214 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_215 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_216 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_217 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_218 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_219 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_21 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_220 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_221 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_222 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_223 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_224 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_225 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_226 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_227 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_228 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_229 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_22 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_230 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_231 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_232 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_233 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_234 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_235 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_236 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_237 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_238 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_239 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_23 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_240 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_241 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_242 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_243 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_244 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_245 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_246 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_247 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_248 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_249 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_24 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_250 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_251 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_252 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_253 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_254 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_255 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_256 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_257 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_258 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_259 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_25 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_260 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_261 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_262 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_263 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_264 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_265 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_266 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_267 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_268 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_269 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_26 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_270 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_271 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_272 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_273 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_274 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_275 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_276 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_277 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_278 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_279 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_27 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_280 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_281 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_282 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_283 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_284 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_285 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_286 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_287 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_288 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_289 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_28 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_290 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_291 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_292 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_293 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_294 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_295 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_296 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_297 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_298 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_299 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_29 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_2 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_300 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_301 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_302 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_303 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_304 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_305 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_306 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_307 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_308 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_309 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_30 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_310 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_311 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_312 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_313 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_314 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_315 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_316 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_317 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_318 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_319 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_31 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_320 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_321 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_322 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_323 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_324 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_325 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_326 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_327 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_328 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_329 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_32 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_330 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_331 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_332 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_333 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_33 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_34 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_35 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_36 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_37 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_38 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_39 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_3 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_40 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_41 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_42 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_43 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_44 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_45 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_46 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_47 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_48 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_49 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_4 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_50 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_51 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_52 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_53 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_54 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_55 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_56 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_57 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_58 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_59 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_5 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_60 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_61 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_62 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_63 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_64 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_65 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_66 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_67 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_68 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_69 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_6 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_70 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_71 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_72 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_73 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_74 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_75 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_76 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_77 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_78 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_79 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_7 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_80 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_81 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_82 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_83 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_84 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_85 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_86 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_87 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_88 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_89 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_8 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_90 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_91 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_92 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_93 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_94 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_95 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_96 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_97 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_98 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_99 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_9 -s SGNex_K562_directRNA_replicate6_run1/FAL41534_pass_0afd45b3_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_0 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_10 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_11 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_12 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_13 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_14 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_15 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_16 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_17 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_18 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_19 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_1 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_20 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_21 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_22 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_23 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_24 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_25 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_26 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_27 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_28 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_29 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_2 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_30 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_31 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_32 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_33 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_34 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_35 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_36 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_37 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_38 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_39 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_3 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_40 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_41 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_42 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_43 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_44 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_45 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_46 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_47 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_48 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_49 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_4 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_50 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_51 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_52 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_53 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_54 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_55 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_56 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_57 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_5 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_6 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_7 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_8 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_9 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_50db8c8b241519a717dd3367a8836cedb85d01d6_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_0 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_100 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_101 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_102 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_103 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_104 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_105 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_106 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_107 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_108 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_109 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_10 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_110 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_111 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_112 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_113 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_114 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_115 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_116 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_117 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_118 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_119 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_11 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_120 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_121 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_122 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_123 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_124 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_125 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_126 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_127 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_128 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_129 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_12 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_130 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_131 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_132 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_133 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_134 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_135 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_136 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_137 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_138 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_139 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_13 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_140 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_141 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_142 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_143 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_144 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_145 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_146 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_147 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_148 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_149 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_14 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_150 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_151 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_152 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_153 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_154 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_155 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_156 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_157 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_158 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_159 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_15 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_160 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_161 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_162 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_163 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_164 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_165 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_166 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_167 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_168 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_169 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_16 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_170 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_171 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_172 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_173 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_174 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_175 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_176 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_177 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_178 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_179 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_17 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_180 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_181 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_182 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_183 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_184 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_185 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_186 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_187 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_188 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_189 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_18 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_190 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_191 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_192 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_193 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_194 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_195 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_196 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_197 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_198 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_199 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_19 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_1 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_200 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_201 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_202 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_203 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_204 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_205 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_206 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_207 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_208 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_209 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_20 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_210 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_211 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_212 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_213 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_214 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_215 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_216 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_217 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_218 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_219 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_21 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_220 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_221 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_222 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_223 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_224 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_225 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_226 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_227 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_228 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_229 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_22 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_230 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_231 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_232 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_233 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_234 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_235 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_236 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_237 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_238 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_239 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_23 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_240 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_241 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_242 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_243 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_244 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_245 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_246 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_247 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_248 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_249 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_24 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_250 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_251 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_252 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_253 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_254 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_255 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_256 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_257 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_258 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_259 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_25 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_260 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_261 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_262 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_263 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_264 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_265 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_266 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_267 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_268 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_269 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_26 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_270 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_271 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_272 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_273 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_274 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_275 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_276 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_277 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_278 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_279 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_27 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_280 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_281 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_282 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_283 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_284 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_285 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_286 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_287 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_288 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_289 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_28 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_290 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_291 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_292 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_293 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_294 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_295 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_296 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_297 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_298 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_299 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_29 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_2 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_300 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_301 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_302 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_303 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_304 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_305 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_306 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_307 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_308 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_309 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_30 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_310 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_311 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_312 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_313 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_314 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_315 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_316 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_317 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_318 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_319 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_31 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_320 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_321 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_322 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_323 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_324 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_325 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_326 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_327 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_328 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_329 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_32 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_330 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_331 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_332 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_333 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_334 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_335 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_336 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_337 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_338 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_339 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_33 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_340 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_341 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_342 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_343 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_344 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_345 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_346 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_347 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_348 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_349 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_34 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_350 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_351 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_352 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_353 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_354 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_355 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_356 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_357 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_358 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_359 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_35 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_360 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_361 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_36 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_37 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_38 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_39 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_3 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_40 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_41 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_42 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_43 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_44 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_45 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_46 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_47 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_48 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_49 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_4 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_50 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_51 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_52 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_53 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_54 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_55 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_56 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_57 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_58 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_59 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_5 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_60 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_61 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_62 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_63 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_64 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_65 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_66 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_67 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_68 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_69 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_6 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_70 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_71 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_72 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_73 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_74 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_75 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_76 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_77 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_78 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_79 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_7 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_80 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_81 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_82 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_83 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_84 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_85 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_86 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_87 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_88 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_89 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_8 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_90 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_91 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_92 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_93 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_94 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_95 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_96 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_97 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_98 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_99 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_9 -s SGNex_MCF7_directRNA_replicate3_run1/FAK46402_a2c031f3252b5c8aad03574019e2875b37a5ef81_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_0 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_100 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_101 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_102 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_103 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_104 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_105 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_106 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_107 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_108 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_109 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_10 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_110 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_111 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_112 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_113 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_114 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_115 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_116 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_117 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_118 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_119 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_11 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_120 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_121 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_122 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_123 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_124 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_125 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_126 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_127 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_128 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_129 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_12 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_130 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_131 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_132 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_133 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_134 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_135 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_136 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_137 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_138 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_139 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_13 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_140 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_141 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_142 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_143 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_144 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_145 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_146 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_147 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_148 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_149 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_14 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_150 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_151 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_152 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_153 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_154 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_155 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_156 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_157 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_158 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_159 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_15 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_160 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_161 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_162 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_163 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_164 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_165 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_166 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_167 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_168 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_169 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_16 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_170 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_171 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_172 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_173 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_174 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_175 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_176 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_177 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_178 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_179 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_17 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_180 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_181 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_182 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_183 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_184 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_185 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_186 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_187 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_188 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_189 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_18 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_190 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_191 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_192 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_193 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_194 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_195 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_196 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_197 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_198 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_199 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_19 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_1 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_200 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_201 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_202 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_203 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_204 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_205 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_206 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_207 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_208 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_209 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_20 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_210 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_211 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_212 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_213 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_214 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_215 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_216 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_217 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_218 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_219 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_21 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_220 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_221 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_222 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_223 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_224 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_225 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_226 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_227 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_228 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_229 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_22 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_230 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_231 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_232 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_233 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_234 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_235 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_236 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_237 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_238 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_239 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_23 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_240 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_241 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_242 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_243 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_244 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_245 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_246 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_247 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_248 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_249 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_24 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_250 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_251 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_252 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_253 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_254 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_255 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_256 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_257 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_258 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_259 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_25 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_260 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_261 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_262 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_263 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_264 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_265 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_266 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_267 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_268 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_269 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_26 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_27 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_28 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_29 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_2 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_30 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_31 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_32 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_33 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_34 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_35 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_36 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_37 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_38 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_39 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_3 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_40 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_41 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_42 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_43 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_44 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_45 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_46 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_47 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_48 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_49 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_4 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_50 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_51 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_52 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_53 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_54 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_55 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_56 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_57 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_58 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_59 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_5 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_60 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_61 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_62 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_63 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_64 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_65 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_66 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_67 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_68 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_69 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_6 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_70 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_71 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_72 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_73 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_74 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_75 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_76 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_77 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_78 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_79 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_7 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_80 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_81 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_82 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_83 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_84 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_85 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_86 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_87 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_88 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_89 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_8 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_90 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_91 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_92 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_93 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_94 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_95 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_96 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_97 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_98 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_99 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_9 -s SGNex_MCF7_directRNA_replicate4_run1/FAK31749_8ffe7c7106f33ae80b0e788b8504954cff40cf47_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_0 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_100 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_101 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_102 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_103 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_104 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_105 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_106 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_107 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_108 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_109 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_10 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_110 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_111 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_112 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_113 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_114 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_115 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_116 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_117 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_118 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_119 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_11 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_120 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_121 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_122 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_123 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_124 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_125 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_126 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_127 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_128 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_129 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_12 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_130 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_131 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_132 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_133 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_134 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_135 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_136 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_137 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_138 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_139 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_13 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_140 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_141 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_142 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_143 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_144 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_145 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_146 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_147 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_148 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_149 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_14 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_150 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_151 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_152 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_153 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_154 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_155 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_156 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_157 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_158 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_159 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_15 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_160 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_161 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_162 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_163 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_164 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_165 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_166 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_167 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_168 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_169 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_16 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_170 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_171 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_172 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_173 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_174 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_175 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_176 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_177 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_178 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_179 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_17 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_180 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_181 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_182 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_183 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_184 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_185 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_186 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_187 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_188 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_189 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_18 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_190 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_191 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_192 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_193 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_194 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_195 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_196 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_197 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_198 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_199 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_19 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_1 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_200 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_201 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_202 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_203 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_204 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_205 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_206 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_207 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_208 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_209 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_20 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_210 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_211 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_212 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_213 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_214 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_215 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_216 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_217 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_218 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_219 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_21 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_220 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_221 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_222 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_223 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_224 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_225 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_226 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_227 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_228 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_229 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_22 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_230 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_231 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_232 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_233 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_234 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_235 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_236 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_237 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_238 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_239 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_23 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_240 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_241 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_242 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_243 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_244 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_245 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_246 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_247 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_248 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_249 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_24 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_250 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_251 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_252 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_253 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_254 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_255 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_256 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_257 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_258 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_259 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_25 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_260 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_261 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_262 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_263 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_264 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_265 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_266 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_267 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_268 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_269 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_26 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_270 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_271 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_272 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_273 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_274 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_275 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_276 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_277 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_278 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_279 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_27 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_280 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_281 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_282 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_283 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_284 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_285 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_286 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_287 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_288 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_289 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_28 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_290 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_291 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_292 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_293 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_294 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_295 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_296 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_297 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_298 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_299 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_29 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_2 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_300 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_301 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_302 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_303 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_304 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_305 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_306 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_307 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_308 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_309 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_30 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_310 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_311 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_312 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_313 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_314 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_315 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_316 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_317 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_318 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_319 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_31 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_320 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_321 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_322 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_323 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_324 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_325 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_326 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_327 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_328 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_329 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_32 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_330 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_331 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_332 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_333 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_334 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_335 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_336 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_337 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_338 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_339 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_33 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_340 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_341 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_342 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_343 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_344 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_345 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_346 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_347 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_348 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_349 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_34 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_350 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_351 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_352 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_353 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_354 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_355 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_356 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_357 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_358 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_359 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_35 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_360 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_361 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_362 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_363 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_364 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_365 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_366 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_367 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_368 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_369 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_36 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_370 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_371 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_372 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_373 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_374 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_375 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_376 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_377 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_378 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_379 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_37 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_380 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_381 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_382 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_383 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_384 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_385 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_386 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_387 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_388 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_389 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_38 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_390 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_391 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_392 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_393 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_394 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_395 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_396 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_397 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_398 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_399 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_39 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_3 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_400 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_401 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_402 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_403 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_404 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_405 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_406 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_407 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_408 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_409 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_40 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_410 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_411 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_412 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_413 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_414 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_415 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_416 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_417 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_418 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_419 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_41 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_420 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_421 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_422 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_423 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_424 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_425 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_425-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_426 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_426-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_427 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_427-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_428 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_428-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_429 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_429-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_42 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_430 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_430-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_431 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_431-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_432 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_432-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_433 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_433-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_434 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_434-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_435 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_435-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_436 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_436-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_437 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_437-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_438 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_438-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_439 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_439-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_43 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_440 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_440-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_441 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_441-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_442 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_442-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_443 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_443-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_444 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_444-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_445 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_445-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_446 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_446-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_447 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_447-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_448 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_448-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_449 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_449-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_44 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_450 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_450-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_451 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_451-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_452 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_452-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_453 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_453-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_454 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_454-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_455 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_455-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_456 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_456-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_457 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_457-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_458 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_458-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_459 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_459-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_45 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_460 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_460-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_461 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_461-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_462 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_462-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_463 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_463-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_464 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_464-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_465 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_465-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_466 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_466-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_467 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_467-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_468 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_468-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_469 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_469-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_46 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_470 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_470-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_471 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_471-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_472 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_472-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_473 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_473-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_474 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_474-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_475 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_475-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_476 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_476-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_477 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_477-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_478 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_478-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_479 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_479-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_47 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_480 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_480-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_481 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_481-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_482 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_482-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_483 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_483-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_484 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_484-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_485 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_485-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_486 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_486-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_487 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_487-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_488 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_488-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_489 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_489-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_48 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_490 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_490-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_491 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_491-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_492 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_492-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_493 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_493-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_494 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_494-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_495 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_495-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_496 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_496-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_497 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_497-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_498 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_498-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_499 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_499-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_49 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_4 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_500 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_500-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_501 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_501-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_502 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_502-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_503 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_503-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_504 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_504-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_505 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_505-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_506 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_506-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_507 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_507-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_508 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_508-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_509 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_509-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_50 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_510 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_510-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_511 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_511-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_512 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_512-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_513 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_513-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_514 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_514-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_515 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_515-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_516 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_516-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_517 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_517-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_518 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_518-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_519 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_519-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_51 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_520 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_520-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_521 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_521-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_522 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_522-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_523 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_523-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_524 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_524-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_525 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_525-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_526 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_526-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_527 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_527-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_528 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_528-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_529 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_529-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_52 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_530 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_530-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_531 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_531-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_532 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_532-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_533 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_533-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_534 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_534-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_535 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_535-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_536 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_536-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_537 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_537-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_538 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_538-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_539 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_539-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_53 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_540 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_540-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_541 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_541-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_542 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_542-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_543 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_543-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_544 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_544-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_545 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_545-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_546 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_546-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_547 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_547-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_548 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_548-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_549 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_549-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_54 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_550 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_550-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_551 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_551-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_552 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_552-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_553 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_553-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_554 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_554-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_555 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_555-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_556 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_556-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_557 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_557-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_558 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_558-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_559 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_559-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_55 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_560 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_560-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_561 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_561-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_562 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_562-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_563 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_563-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_564 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_564-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_565 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_565-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_566 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_566-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_567 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_567-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_568 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_568-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_569 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_569-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_56 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_570 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_570-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_571 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_571-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_572 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_572-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_573 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_573-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_574 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_574-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_57 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_58 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_59 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_5 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_60 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_61 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_62 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_63 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_64 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_65 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_66 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_67 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_68 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_69 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_6 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_70 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_71 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_72 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_73 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_74 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_75 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_76 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_77 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_78 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_79 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_7 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_80 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_81 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_82 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_83 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_84 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_85 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_86 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_87 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_88 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_89 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_8 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_90 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_91 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_92 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_93 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_94 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_95 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_96 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_97 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_98 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_99 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_9 -s SGNex_MCF7-EV_directRNA_replicate1_run1/FAK37026_02cc875d34f9bd5cf0ccccee891d6a64d21efb77_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_0 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_100 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_101 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_102 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_103 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_104 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_105 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_106 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_107 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_108 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_109 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_10 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_110 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_111 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_112 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_113 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_114 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_115 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_116 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_117 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_118 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_119 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_11 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_120 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_121 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_122 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_123 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_124 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_125 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_126 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_127 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_128 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_129 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_12 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_130 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_131 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_132 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_133 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_134 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_135 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_136 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_137 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_138 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_139 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_13 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_140 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_141 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_142 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_143 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_144 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_145 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_146 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_147 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_148 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_149 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_14 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_150 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_151 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_152 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_153 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_154 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_155 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_156 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_157 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_158 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_159 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_15 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_160 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_161 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_162 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_163 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_164 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_165 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_166 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_167 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_168 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_169 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_16 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_170 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_171 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_172 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_173 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_174 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_175 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_176 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_177 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_178 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_179 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_17 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_180 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_181 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_182 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_183 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_184 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_185 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_186 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_187 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_188 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_189 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_18 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_190 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_191 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_192 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_193 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_194 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_195 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_196 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_197 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_198 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_199 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_19 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_1 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_200 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_201 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_202 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_203 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_204 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_205 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_206 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_207 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_208 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_209 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_20 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_210 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_211 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_212 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_213 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_214 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_215 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_216 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_217 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_218 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_219 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_21 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_220 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_221 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_222 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_223 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_224 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_225 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_226 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_227 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_228 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_229 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_22 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_230 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_231 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_232 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_233 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_234 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_235 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_236 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_237 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_238 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_239 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_23 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_240 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_241 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_242 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_243 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_244 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_245 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_246 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_247 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_248 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_249 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_24 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_250 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_251 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_252 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_253 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_254 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_255 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_256 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_257 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_258 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_259 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_25 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_260 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_261 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_262 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_263 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_264 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_265 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_266 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_267 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_268 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_269 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_26 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_270 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_271 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_272 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_273 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_274 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_275 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_276 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_277 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_278 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_279 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_27 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_280 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_281 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_282 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_283 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_284 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_285 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_286 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_287 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_288 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_289 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_28 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_290 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_291 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_292 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_293 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_294 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_295 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_296 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_297 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_298 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_299 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_29 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_2 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_300 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_301 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_302 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_303 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_304 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_305 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_306 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_307 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_308 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_309 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_30 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_310 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_311 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_312 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_313 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_314 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_315 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_316 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_317 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_318 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_319 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_31 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_320 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_321 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_322 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_323 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_324 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_325 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_326 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_327 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_328 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_329 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_32 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_330 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_331 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_332 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_333 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_334 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_335 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_336 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_337 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_338 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_339 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_33 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_340 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_341 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_342 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_343 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_344 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_345 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_346 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_347 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_348 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_349 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_34 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_350 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_351 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_352 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_353 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_354 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_355 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_356 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_357 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_358 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_358-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_359 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_359-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_35 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_360 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_360-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_361 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_361-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_362 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_362-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_363 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_363-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_364 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_364-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_365 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_365-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_366 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_366-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_367 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_367-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_368 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_368-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_369 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_369-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_36 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_370 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_370-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_371 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_371-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_372 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_372-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_373 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_373-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_374 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_374-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_375 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_375-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_376 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_376-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_377 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_377-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_378 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_378-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_379 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_379-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_37 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_380 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_380-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_381 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_381-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_382 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_382-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_383 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_383-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_384 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_384-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_385 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_385-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_386 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_386-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_387 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_387-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_388 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_388-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_389 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_389-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_38 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_390 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_390-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_391 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_391-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_392 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_392-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_393 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_393-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_394 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_394-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_395 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_395-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_396 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_396-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_397 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_397-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_398 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_398-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_399 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_399-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_39 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_3 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_400 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_400-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_401 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_401-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_402 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_402-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_403 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_403-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_404 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_404-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_405 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_405-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_406 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_406-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_407 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_407-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_408 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_408-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_409 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_409-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_40 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_410 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_410-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_411 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_411-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_412 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_412-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_413 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_413-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_414 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_414-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_415 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_415-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_416 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_416-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_417 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_417-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_418 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_418-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_419 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_419-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_41 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_420 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_420-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_421 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_421-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_422 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_422-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_423 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_423-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_424 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_424-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_42 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_43 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_44 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_45 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_46 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_47 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_48 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_49 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_4 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_50 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_51 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_52 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_53 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_54 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_55 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_56 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_57 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_58 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_59 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_5 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_60 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_61 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_62 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_63 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_64 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_65 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_66 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_67 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_68 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_69 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_6 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_70 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_71 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_72 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_73 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_74 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_75 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_76 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_77 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_78 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_79 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_7 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_80 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_81 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_82 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_83 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_84 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_85 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_86 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_87 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_88 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_89 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_8 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_90 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_91 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_92 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_93 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_94 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_95 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_96 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_97 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_98 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_99 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_9 -s SGNex_MCF7-EV_directRNA_replicate2_run1/FAK27145_0d8e347e60d4d794398d618e81276c95e34efc39_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_0 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_10 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_11 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_12 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_13 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_14 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_15 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_16 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_17 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_18 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_19 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_1 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_20 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_21 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_22 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_23 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_24 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_25 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_26 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_27 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_28 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_29 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_2 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_30 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_31 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_32 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_33 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_34 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_35 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_36 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_37 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_38 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_39 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_3 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_40 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_41 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_42 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_43 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_44 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_45 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_46 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_47 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_48 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_49 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_4 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_50 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_51 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_52 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_53 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_54 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_55 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_56 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_57 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_58 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_59 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_5 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_60 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_61 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_62 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_63 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_64 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_65 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_66 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_67 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_68 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_69 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_6 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_70 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_71 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_72 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_73 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_74 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_75 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_76 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_77 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_78 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_79 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_7 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_80 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_81 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_82 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_83 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_84 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_85 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_86 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_87 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_88 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_89 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_8 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_90 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_91 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_92 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_9 -s SGNex_Myeloma-N082_directRNA_replicate1_run1/FAK48830_943e5944c778fed434e61ec2402d253bb0446cec_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_0 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_100 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_101 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_102 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_103 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_104 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_105 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_106 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_107 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_108 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_109 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_10 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_110 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_111 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_112 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_113 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_114 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_115 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_116 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_117 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_118 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_119 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_11 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_120 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_121 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_122 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_123 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_124 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_125 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_126 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_127 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_128 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_129 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_12 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_130 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_131 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_132 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_133 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_134 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_135 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_136 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_137 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_138 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_139 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_13 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_140 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_141 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_142 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_143 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_144 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_145 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_146 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_147 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_148 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_149 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_14 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_150 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_151 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_152 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_153 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_154 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_155 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_156 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_157 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_158 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_159 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_15 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_160 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_161 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_162 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_163 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_164 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_165 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_166 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_167 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_168 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_169 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_16 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_170 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_171 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_172 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_173 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_174 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_175 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_176 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_177 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_178 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_179 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_17 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_180 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_181 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_182 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_183 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_184 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_185 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_186 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_187 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_188 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_189 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_18 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_190 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_191 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_192 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_193 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_194 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_195 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_196 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_197 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_198 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_199 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_19 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_1 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_200 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_201 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_202 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_203 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_204 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_205 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_206 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_207 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_208 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_209 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_20 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_210 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_211 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_212 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_213 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_214 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_215 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_216 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_217 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_218 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_219 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_21 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_220 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_221 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_222 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_223 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_224 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_225 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_226 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_227 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_228 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_22 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_23 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_24 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_25 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_26 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_27 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_28 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_29 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_2 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_30 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_31 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_32 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_33 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_34 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_35 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_36 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_37 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_38 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_39 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_3 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_40 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_41 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_42 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_43 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_44 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_45 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_46 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_47 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_48 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_49 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_4 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_50 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_51 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_52 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_53 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_54 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_55 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_56 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_57 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_58 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_59 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_5 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_60 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_61 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_62 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_63 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_64 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_65 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_66 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_67 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_68 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_69 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_6 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_70 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_71 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_72 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_73 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_74 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_75 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_76 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_77 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_78 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_79 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_7 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_80 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_81 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_82 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_83 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_84 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_85 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_86 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_87 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_88 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_89 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_8 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_90 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_91 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_92 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_93 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_94 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_95 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_96 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_97 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_98 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_99 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_9 -s SGNex_Myeloma-N104_directRNA_replicate1_run1/FAK45913_9225165dfb5c713ff33390d1a671d47b3b94e1ea_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/_378e066c22e48225106b6e8ad6945dd9bd63f7bf_0 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/_378e066c22e48225106b6e8ad6945dd9bd63f7bf_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_0 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_100 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_101 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_102 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_103 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_104 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_105 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_106 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_107 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_108 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_109 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_10 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_110 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_111 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_112 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_113 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_114 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_115 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_116 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_117 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_118 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_119 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_11 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_120 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_121 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_122 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_123 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_124 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_125 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_126 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_127 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_128 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_129 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_12 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_130 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_131 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_132 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_133 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_134 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_135 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_136 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_137 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_138 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_139 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_13 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_140 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_141 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_142 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_143 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_144 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_145 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_146 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_147 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_148 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_149 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_14 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_150 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_15 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_16 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_17 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_18 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_19 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_1 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_20 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_21 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_22 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_23 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_24 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_25 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_26 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_27 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_28 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_29 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_2 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_30 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_31 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_32 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_33 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_34 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_35 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_36 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_36-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_37 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_37-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_38 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_38-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_39 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_39-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_3 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_40 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_40-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_41 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_41-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_42 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_42-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_43 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_43-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_44 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_44-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_45 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_45-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_46 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_46-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_47 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_47-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_48 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_48-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_49 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_49-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_4 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_50 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_50-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_51 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_51-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_52 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_52-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_53 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_53-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_54 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_54-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_55 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_55-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_56 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_56-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_57 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_57-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_58 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_58-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_59 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_59-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_5 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_60 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_60-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_61 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_61-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_62 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_62-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_63 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_63-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_64 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_64-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_65 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_65-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_66 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_66-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_67 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_67-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_68 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_68-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_69 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_69-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_6 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_70 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_70-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_71 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_71-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_72 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_72-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_73 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_73-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_74 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_74-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_75 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_75-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_76 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_76-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_77 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_77-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_78 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_78-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_79 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_79-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_7 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_80 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_80-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_81 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_81-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_82 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_82-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_83 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_83-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_84 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_84-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_85 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_85-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_86 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_86-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_87 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_87-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_88 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_88-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_89 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_89-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_8 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_8-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_90 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_90-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_91 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_91-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_92 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_92-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_93 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_93-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_94 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_94-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_95 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_95-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_96 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_96-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_97 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_97-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_98 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_98-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_99 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_99-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_9 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_378e066c22e48225106b6e8ad6945dd9bd63f7bf_9-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_0 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_1 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_2 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_3 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_4 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_4-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_5 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_5-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_6 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_6-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_7 -s SGNex_Myeloma-N122_directRNA_replicate1_run1/FAK45906_6e7ffb96a2a7fd1c2600ce0a8fae51b0388bb0e1_7-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_0 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_100 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_100-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_101 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_101-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_102 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_102-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_103 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_103-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_104 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_104-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_105 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_105-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_106 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_106-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_107 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_107-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_108 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_108-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_109 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_109-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_10 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_10-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_110 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_110-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_111 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_111-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_112 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_112-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_113 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_113-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_114 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_114-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_115 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_115-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_116 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_116-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_117 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_117-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_118 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_118-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_119 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_119-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_11 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_11-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_120 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_120-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_121 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_121-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_122 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_122-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_123 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_123-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_124 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_124-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_125 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_125-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_126 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_126-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_127 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_127-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_128 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_128-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_129 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_129-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_12 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_12-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_130 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_130-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_131 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_131-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_132 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_132-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_133 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_133-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_134 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_134-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_135 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_135-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_136 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_136-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_137 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_137-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_138 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_138-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_139 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_139-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_13 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_13-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_140 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_140-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_141 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_141-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_142 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_142-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_143 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_143-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_144 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_144-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_145 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_145-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_146 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_146-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_147 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_147-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_148 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_148-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_149 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_149-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_14 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_14-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_150 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_150-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_151 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_151-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_152 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_152-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_153 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_153-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_154 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_154-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_155 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_155-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_156 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_156-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_157 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_157-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_158 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_158-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_159 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_159-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_15 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_15-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_160 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_160-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_161 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_161-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_162 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_162-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_163 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_163-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_164 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_164-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_165 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_165-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_166 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_166-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_167 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_167-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_168 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_168-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_169 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_169-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_16 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_16-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_170 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_170-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_171 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_171-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_172 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_172-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_173 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_173-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_174 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_174-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_175 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_175-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_176 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_176-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_177 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_177-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_178 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_178-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_179 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_179-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_17 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_17-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_180 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_180-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_181 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_181-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_182 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_182-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_183 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_183-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_184 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_184-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_185 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_185-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_186 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_186-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_187 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_187-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_188 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_188-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_189 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_189-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_18 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_18-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_190 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_190-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_191 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_191-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_192 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_192-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_193 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_193-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_194 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_194-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_195 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_195-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_196 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_196-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_197 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_197-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_198 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_198-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_199 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_199-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_19 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_19-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_1 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_200 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_200-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_201 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_201-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_202 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_202-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_203 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_203-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_204 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_204-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_205 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_205-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_206 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_206-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_207 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_207-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_208 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_208-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_209 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_209-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_20 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_20-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_210 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_210-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_211 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_211-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_212 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_212-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_213 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_213-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_214 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_214-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_215 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_215-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_216 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_216-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_217 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_217-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_218 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_218-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_219 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_219-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_21 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_21-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_220 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_220-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_221 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_221-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_222 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_222-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_223 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_223-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_224 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_224-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_225 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_225-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_226 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_226-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_227 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_227-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_228 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_228-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_229 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_229-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_22 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_22-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_230 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_230-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_231 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_231-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_232 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_232-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_233 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_233-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_234 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_234-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_235 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_235-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_236 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_236-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_237 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_237-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_238 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_238-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_239 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_239-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_23 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_23-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_240 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_240-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_241 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_241-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_242 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_242-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_243 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_243-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_244 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_244-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_245 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_245-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_246 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_246-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_247 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_247-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_248 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_248-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_249 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_249-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_24 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_24-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_250 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_250-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_251 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_251-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_252 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_252-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_253 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_253-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_254 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_254-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_255 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_255-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_256 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_256-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_257 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_257-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_258 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_258-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_259 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_259-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_25 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_25-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_260 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_260-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_261 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_261-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_262 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_262-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_263 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_263-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_264 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_264-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_265 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_265-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_266 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_266-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_267 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_267-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_268 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_268-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_269 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_269-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_26 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_26-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_270 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_270-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_271 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_271-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_272 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_272-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_273 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_273-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_274 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_274-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_275 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_275-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_276 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_276-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_277 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_277-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_278 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_278-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_279 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_279-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_27 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_27-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_280 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_280-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_281 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_281-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_282 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_282-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_283 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_283-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_284 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_284-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_285 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_285-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_286 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_286-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_287 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_287-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_288 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_288-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_289 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_289-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_28 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_28-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_290 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_290-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_291 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_291-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_292 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_292-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_293 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_293-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_294 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_294-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_295 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_295-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_296 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_296-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_297 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_297-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_298 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_298-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_299 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_299-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_29 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_29-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_2 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_300 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_300-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_301 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_301-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_302 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_302-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_303 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_303-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_304 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_304-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_305 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_305-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_306 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_306-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_307 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_307-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_308 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_308-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_309 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_309-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_30 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_30-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_310 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_310-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_311 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_311-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_312 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_312-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_313 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_313-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_314 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_314-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_315 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_315-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_316 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_316-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_317 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_317-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_318 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_318-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_319 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_319-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_31 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_31-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_320 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_320-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_321 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_321-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_322 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_322-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_323 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_323-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_324 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_324-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_325 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_325-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_326 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_326-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_327 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_327-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_328 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_328-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_329 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_329-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_32 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_32-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_330 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_330-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_331 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_331-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_332 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_332-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_333 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_333-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_334 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_334-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_335 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_335-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_336 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_336-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_337 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_337-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_338 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_338-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_339 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_339-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_33 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_33-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_340 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_340-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_341 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_341-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_342 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_342-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_343 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_343-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_344 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_344-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_345 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_345-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_346 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_346-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_347 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_347-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_348 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_348-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_349 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_349-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_34 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_34-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_350 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_350-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_351 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_351-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_352 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_352-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_353 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_353-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_354 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_354-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_355 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_355-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_356 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_356-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_357 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_357-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_35 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_35-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_3 -s SGNex_NCC24_directRNA_replicate1_run1/FAK28212_b20b65b9d4ef6828a47d504832d2880c90e8b823_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/0-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/0-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/0-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/0-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/0-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/0-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/0-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/0-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1000-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1000-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1000-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1000-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1000-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1000-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1000-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1000-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1001-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1001-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1001-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1001-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1001-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1001-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1001-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1001-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1002-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1002-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1002-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1002-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1002-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1002-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1002-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1002-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1003-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1003-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1003-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1003-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1003-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1003-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1003-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1003-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1004-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1004-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1004-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1004-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1004-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1004-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1004-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1004-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1005-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1005-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1005-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1005-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1005-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1005-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1005-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1005-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1006-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1006-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1006-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1006-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1006-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1006-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1006-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1006-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1007-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1007-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1007-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1007-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1007-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1007-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1007-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1007-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1008-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1008-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1008-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1008-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1008-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1008-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1008-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1008-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1009-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1009-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1009-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1009-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1009-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1009-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1009-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1009-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/100-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/100-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/100-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/100-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/100-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/100-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/100-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/100-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1010-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1010-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1010-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1010-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1010-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1010-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1010-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1010-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1011-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1011-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1011-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1011-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1011-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1011-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1011-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1011-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1012-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1012-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1012-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1012-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1012-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1012-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1012-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1012-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1013-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1013-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1013-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1013-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1013-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1013-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1013-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1013-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1014-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1014-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1014-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1014-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1014-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1014-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1014-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1014-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1015-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1015-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1015-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1015-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1015-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1015-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1015-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1015-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1016-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1016-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1016-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1016-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1016-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1016-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1016-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1016-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1017-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1017-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1017-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1017-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1017-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1017-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1017-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1017-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1018-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1018-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1018-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1018-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1018-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1018-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1018-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1018-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1019-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1019-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1019-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1019-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1019-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1019-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1019-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1019-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/101-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/101-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/101-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/101-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/101-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/101-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/101-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/101-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1020-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1020-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1020-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1020-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1020-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1020-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1020-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1020-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1021-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1021-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1021-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1021-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1021-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1021-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1021-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1021-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1022-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1022-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1022-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1022-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1022-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1022-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1022-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1022-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1023-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1023-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1023-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1023-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1023-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1023-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1023-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1023-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1024-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1024-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1024-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1024-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1024-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1024-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1024-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1024-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1025-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1025-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1025-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1025-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1025-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1025-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1025-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1025-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1026-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1026-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1026-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1026-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1026-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1026-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1026-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1026-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1027-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1027-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1027-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1027-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1027-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1027-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1027-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1027-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1028-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1028-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1028-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1028-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1028-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1028-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1028-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1028-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1029-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1029-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1029-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1029-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1029-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1029-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1029-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1029-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/102-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/102-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/102-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/102-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/102-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/102-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/102-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/102-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1030-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1030-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1030-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1030-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1030-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1030-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1030-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1030-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1031-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1031-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1031-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1031-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1031-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1031-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1031-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1031-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1032-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1032-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1032-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1032-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1032-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1032-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1032-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1032-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1033-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1033-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1033-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1033-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1033-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1033-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1033-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1033-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1034-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1034-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1034-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1034-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1034-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1034-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1034-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1034-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1035-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1035-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1035-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1035-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1035-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1035-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1035-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1035-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1036-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1036-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1036-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1036-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1036-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1036-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1036-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1036-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1037-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1037-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1037-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1037-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1037-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1037-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1037-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1037-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1038-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1038-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1038-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1038-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1038-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1038-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1038-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1038-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1039-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1039-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1039-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1039-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1039-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1039-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1039-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1039-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/103-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/103-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/103-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/103-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/103-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/103-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/103-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/103-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1040-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1040-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1040-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1040-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1040-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1040-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1040-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1040-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1041-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1041-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1041-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1041-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1041-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1041-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1041-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1041-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1042-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1042-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1042-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1042-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1042-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1042-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1042-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1042-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1043-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1043-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1043-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1043-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1043-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1043-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1043-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1043-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1044-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1044-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1044-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1044-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1044-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1044-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1044-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1044-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1045-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1045-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1045-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1045-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1045-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1045-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1045-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1045-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1046-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1046-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1046-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1046-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1046-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1046-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1046-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1046-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1047-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1047-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1047-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1047-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1047-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1047-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1047-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1047-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1048-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1048-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1048-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1048-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1048-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1048-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1048-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1048-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1049-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1049-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1049-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1049-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1049-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1049-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1049-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1049-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/104-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/104-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/104-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/104-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/104-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/104-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/104-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/104-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1050-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1050-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1050-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1050-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1050-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1050-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1050-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1050-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1051-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1051-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1051-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1051-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1051-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1051-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1051-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1051-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1052-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1052-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1052-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1052-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1052-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1052-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1052-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1052-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1053-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1053-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1053-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1053-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1053-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1053-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1053-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1053-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1054-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1054-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1054-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1054-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1054-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1054-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1054-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1054-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1055-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1055-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1055-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1055-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1055-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1055-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1055-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1055-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1056-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1056-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1056-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1056-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1056-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1056-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1056-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1056-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1057-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1057-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1057-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1057-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1057-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1057-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1057-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1057-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1058-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1058-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1058-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1058-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1058-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1058-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1058-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1058-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1059-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1059-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1059-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1059-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1059-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1059-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1059-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1059-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/105-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/105-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/105-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/105-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/105-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/105-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/105-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/105-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1060-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1060-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1060-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1060-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1060-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1060-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1060-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1060-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1061-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1061-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1061-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1061-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1061-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1061-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1061-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1061-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1062-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1062-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1062-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1062-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1062-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1062-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1062-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1062-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1063-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1063-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1063-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1063-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1063-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1063-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1063-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1063-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1064-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1064-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1064-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1064-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1064-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1064-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1064-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1064-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1065-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1065-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1065-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1065-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1065-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1065-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1065-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1065-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1066-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1066-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1066-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1066-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1066-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1066-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1066-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1066-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1067-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1067-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1067-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1067-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1067-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1067-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1067-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1067-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1068-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1068-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1068-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1068-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1068-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1068-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1068-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1068-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1069-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1069-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1069-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1069-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1069-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1069-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1069-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1069-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/106-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/106-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/106-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/106-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/106-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/106-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/106-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/106-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1070-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1070-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1070-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1070-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1070-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1070-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1070-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1070-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1071-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1071-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1071-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1071-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1071-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1071-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1071-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1071-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1072-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1072-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1072-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1072-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1072-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1072-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1072-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1072-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1073-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1073-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1073-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1073-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1073-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1073-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1073-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1073-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1074-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1074-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1074-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1074-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1074-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1074-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1074-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1074-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1075-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1075-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1075-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1075-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1075-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1075-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1075-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1075-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1076-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1076-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1076-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1076-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1076-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1076-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1076-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1076-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1077-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1077-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1077-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1077-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1077-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1077-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1077-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1077-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1078-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1078-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1078-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1078-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1078-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1078-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1078-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1078-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1079-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1079-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1079-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1079-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1079-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1079-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1079-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1079-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/107-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/107-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/107-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/107-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/107-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/107-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/107-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/107-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1080-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1080-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1080-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1080-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1080-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1080-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1080-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1080-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1081-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1081-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1081-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1081-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1081-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1081-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1081-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1081-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1082-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1082-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1082-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1082-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1082-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1082-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1082-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1082-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1083-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1083-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1083-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1083-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1083-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1083-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1083-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1083-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1084-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1084-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1084-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1084-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1084-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1084-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1084-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1084-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1085-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1085-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1085-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1085-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1085-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1085-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1085-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1085-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1086-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1086-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1086-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1086-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1086-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1086-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1086-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1086-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1087-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1087-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1087-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1087-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1087-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1087-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1087-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1087-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1088-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1088-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1088-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1088-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1088-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1088-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1088-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1088-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1089-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1089-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1089-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1089-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1089-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1089-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1089-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1089-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/108-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/108-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/108-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/108-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/108-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/108-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/108-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/108-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1090-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1090-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1090-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1090-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1090-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1090-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1090-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1090-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1091-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1091-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1091-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1091-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1091-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1091-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1091-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1091-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1092-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1092-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1092-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1092-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1092-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1092-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1092-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1092-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1093-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1093-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1093-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1093-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1093-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1093-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1093-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1093-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1094-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1094-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1094-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1094-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1094-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1094-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1094-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1094-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1095-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1095-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1095-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1095-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1095-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1095-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1095-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1095-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1096-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1096-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1096-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1096-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1096-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1096-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1096-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1096-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1097-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1097-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1097-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1097-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1097-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1097-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1097-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1097-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1098-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1098-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1098-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1098-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1098-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1098-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1098-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1098-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1099-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1099-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1099-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1099-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1099-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1099-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1099-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1099-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/109-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/109-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/109-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/109-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/109-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/109-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/109-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/109-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/10-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/10-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/10-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/10-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/10-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/10-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/10-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/10-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1100-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1100-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1100-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1100-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1100-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1100-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1100-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1100-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1101-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1101-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1101-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1101-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1101-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1101-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1101-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1101-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1102-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1102-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1102-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1102-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1102-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1102-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1102-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1102-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1103-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1103-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1103-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1103-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1103-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1103-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1103-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1103-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1104-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1104-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1104-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1104-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1104-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1104-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1104-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1104-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1105-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1105-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1105-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1105-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1105-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1105-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1105-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1105-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1106-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1106-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1106-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1106-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1106-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1106-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1106-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1106-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1107-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1107-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1107-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1107-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1107-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1107-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1107-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1107-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1108-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1108-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1108-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1108-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1108-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1108-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1108-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1108-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1109-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1109-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1109-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1109-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1109-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1109-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1109-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1109-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/110-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/110-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/110-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/110-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/110-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/110-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/110-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/110-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1110-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1110-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1110-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1110-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1110-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1110-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1110-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1110-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1111-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1111-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1111-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1111-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1111-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1111-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1111-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1111-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1112-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1112-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1112-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1112-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1112-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1112-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1112-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1112-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1113-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1113-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1113-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1113-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1113-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1113-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1113-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1113-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1114-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1114-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1114-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1114-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1114-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1114-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1114-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1114-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1115-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1115-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1115-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1115-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1115-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1115-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1115-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1115-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1116-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1116-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1116-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1116-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1116-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1116-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1116-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1116-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1117-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1117-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1117-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1117-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1117-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1117-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1117-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1117-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1118-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1118-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1118-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1118-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1118-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1118-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1118-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1118-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1119-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1119-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1119-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1119-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1119-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1119-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1119-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1119-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/111-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/111-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/111-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/111-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/111-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/111-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/111-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/111-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1120-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1120-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1120-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1120-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1120-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1120-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1120-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1120-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1121-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1121-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1121-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1121-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1121-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1121-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1121-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1121-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1122-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1122-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1122-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1122-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1122-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1122-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1122-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1122-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1123-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1123-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1123-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1123-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1123-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1123-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1123-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1123-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1124-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1124-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1124-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1124-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1124-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1124-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1124-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1124-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1125-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1125-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1125-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1125-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1125-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1125-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1125-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1125-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1126-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1126-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1126-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1126-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1126-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1126-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1126-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1126-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1127-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1127-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1127-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1127-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1127-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1127-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1127-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1127-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1128-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1128-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1128-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1128-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1128-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1128-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1128-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1128-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1129-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1129-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1129-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1129-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1129-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1129-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1129-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1129-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/112-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/112-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/112-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/112-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/112-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/112-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/112-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/112-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1130-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1130-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1130-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1130-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1130-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1130-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1130-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1130-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1131-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1131-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1131-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1131-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1131-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1131-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1131-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1131-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1132-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1132-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1132-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1132-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1132-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1132-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1132-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1132-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1133-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1133-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1133-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1133-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1133-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1133-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1133-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1133-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1134-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1134-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1134-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1134-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1134-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1134-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1134-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1134-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1135-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1135-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1135-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1135-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1135-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1135-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1135-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1135-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1136-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1136-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1136-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1136-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1136-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1136-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1136-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1136-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1137-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1137-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1137-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1137-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1137-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1137-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1137-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1137-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1138-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1138-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1138-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1138-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1138-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1138-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1138-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1138-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1139-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1139-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1139-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1139-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1139-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1139-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1139-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1139-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/113-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/113-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/113-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/113-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/113-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/113-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/113-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/113-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1140-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1140-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1140-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1140-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1140-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1140-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1140-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1140-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1141-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1141-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1141-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1141-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1141-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1141-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1141-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1141-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1142-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1142-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1142-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1142-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1142-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1142-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1142-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1142-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1143-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1143-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1143-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1143-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1143-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1143-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1143-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1143-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1144-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1144-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1144-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1144-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1144-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1144-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1144-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1144-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1145-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1145-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1145-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1145-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1145-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1145-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1145-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1145-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1146-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1146-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1146-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1146-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1146-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1146-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1146-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1146-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1147-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1147-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1147-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1147-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1147-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1147-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1147-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1147-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1148-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1148-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1148-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1148-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1148-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1148-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1148-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1148-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1149-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1149-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1149-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1149-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1149-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1149-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1149-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1149-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/114-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/114-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/114-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/114-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/114-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/114-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/114-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/114-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1150-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1150-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1150-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1150-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1150-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1150-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1150-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1150-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1151-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1151-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1151-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1151-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1151-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1151-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1151-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1151-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1152-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1152-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1152-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1152-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1152-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1152-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1152-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1152-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1153-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1153-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1153-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1153-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1153-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1153-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1153-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1153-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1154-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1154-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1154-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1154-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1154-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1154-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1154-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1154-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1155-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1155-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1155-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1155-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1155-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1155-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1155-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1155-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1156-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1156-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1156-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1156-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1156-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1156-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1156-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1156-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1157-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1157-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1157-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1157-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1157-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1157-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1157-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1157-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1158-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1158-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1158-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1158-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1158-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1158-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1158-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1158-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1159-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1159-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1159-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1159-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1159-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1159-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1159-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1159-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/115-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/115-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/115-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/115-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/115-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/115-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/115-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/115-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1160-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1160-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1160-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1160-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1160-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1160-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1160-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1160-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1161-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1161-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1161-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1161-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1161-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1161-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1161-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1161-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1162-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1162-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1162-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1162-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1162-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1162-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1162-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1162-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1163-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1163-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1163-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1163-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1163-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1163-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1163-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1163-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1164-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1164-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1164-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1164-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1164-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1164-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1164-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1164-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1165-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1165-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1165-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1165-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1165-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1165-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1165-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1165-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1166-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1166-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1166-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1166-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1166-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1166-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1166-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1166-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1167-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1167-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1167-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1167-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1167-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1167-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1167-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1167-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1168-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1168-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1168-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1168-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1168-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1168-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1168-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1168-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1169-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1169-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1169-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1169-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1169-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1169-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1169-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1169-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/116-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/116-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/116-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/116-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/116-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/116-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/116-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/116-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1170-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1170-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1170-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1170-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1170-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1170-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1170-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1170-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1171-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1171-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1171-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1171-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1171-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1171-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1171-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1171-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1172-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1172-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1172-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1172-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1172-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1172-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1172-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1172-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1173-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1173-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1173-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1173-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1173-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1173-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1173-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1173-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1174-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1174-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1174-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1174-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1174-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1174-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1174-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1174-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1175-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1175-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1175-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1175-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1175-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1175-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1175-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1175-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1176-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1176-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1176-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1176-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1176-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1176-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1176-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1176-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1177-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1177-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1177-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1177-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1177-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1177-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1177-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1177-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1178-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1178-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1178-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1178-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1178-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1178-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1178-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1178-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1179-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1179-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1179-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1179-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1179-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1179-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1179-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1179-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/117-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/117-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/117-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/117-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/117-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/117-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/117-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/117-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1180-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1180-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1180-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1180-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1180-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1180-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1180-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1180-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1181-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1181-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1181-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1181-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1181-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1181-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1181-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1181-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1182-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1182-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1182-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1182-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1182-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1182-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1182-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1182-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/118-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/118-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/118-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/118-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/118-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/118-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/118-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/118-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/119-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/119-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/119-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/119-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/119-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/119-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/119-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/119-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/11-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/11-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/11-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/11-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/11-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/11-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/11-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/11-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/120-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/120-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/120-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/120-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/120-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/120-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/120-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/120-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/121-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/121-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/121-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/121-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/121-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/121-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/121-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/121-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/122-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/122-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/122-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/122-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/122-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/122-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/122-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/122-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/123-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/123-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/123-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/123-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/123-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/123-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/123-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/123-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/124-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/124-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/124-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/124-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/124-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/124-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/124-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/124-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/125-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/125-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/125-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/125-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/125-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/125-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/125-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/125-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/126-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/126-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/126-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/126-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/126-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/126-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/126-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/126-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/127-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/127-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/127-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/127-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/127-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/127-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/127-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/127-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/128-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/128-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/128-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/128-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/128-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/128-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/128-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/128-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/129-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/129-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/129-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/129-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/129-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/129-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/129-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/129-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/12-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/12-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/12-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/12-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/12-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/12-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/12-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/12-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/130-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/130-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/130-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/130-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/130-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/130-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/130-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/130-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/131-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/131-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/131-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/131-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/131-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/131-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/131-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/131-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/132-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/132-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/132-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/132-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/132-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/132-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/132-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/132-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/133-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/133-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/133-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/133-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/133-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/133-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/133-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/133-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/134-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/134-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/134-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/134-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/134-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/134-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/134-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/134-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/135-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/135-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/135-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/135-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/135-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/135-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/135-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/135-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/136-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/136-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/136-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/136-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/136-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/136-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/136-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/136-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/137-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/137-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/137-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/137-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/137-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/137-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/137-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/137-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/138-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/138-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/138-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/138-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/138-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/138-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/138-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/138-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/139-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/139-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/139-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/139-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/139-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/139-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/139-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/139-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/13-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/13-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/13-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/13-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/13-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/13-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/13-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/13-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/140-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/140-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/140-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/140-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/140-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/140-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/140-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/140-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/141-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/141-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/141-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/141-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/141-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/141-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/141-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/141-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/142-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/142-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/142-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/142-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/142-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/142-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/142-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/142-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/143-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/143-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/143-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/143-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/143-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/143-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/143-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/143-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/144-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/144-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/144-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/144-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/144-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/144-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/144-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/144-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/145-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/145-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/145-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/145-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/145-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/145-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/145-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/145-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/146-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/146-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/146-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/146-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/146-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/146-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/146-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/146-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/147-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/147-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/147-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/147-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/147-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/147-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/147-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/147-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/148-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/148-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/148-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/148-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/148-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/148-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/148-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/148-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/149-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/149-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/149-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/149-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/149-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/149-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/149-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/149-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/14-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/14-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/14-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/14-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/14-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/14-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/14-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/14-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/150-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/150-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/150-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/150-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/150-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/150-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/150-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/150-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/151-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/151-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/151-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/151-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/151-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/151-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/151-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/151-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/152-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/152-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/152-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/152-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/152-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/152-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/152-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/152-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/153-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/153-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/153-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/153-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/153-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/153-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/153-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/153-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/154-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/154-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/154-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/154-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/154-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/154-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/154-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/154-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/155-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/155-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/155-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/155-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/155-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/155-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/155-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/155-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/156-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/156-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/156-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/156-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/156-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/156-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/156-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/156-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/157-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/157-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/157-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/157-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/157-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/157-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/157-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/157-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/158-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/158-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/158-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/158-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/158-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/158-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/158-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/158-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/159-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/159-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/159-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/159-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/159-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/159-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/159-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/159-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/15-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/15-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/15-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/15-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/15-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/15-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/15-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/15-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/160-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/160-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/160-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/160-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/160-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/160-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/160-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/160-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/161-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/161-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/161-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/161-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/161-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/161-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/161-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/161-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/162-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/162-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/162-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/162-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/162-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/162-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/162-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/162-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/163-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/163-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/163-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/163-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/163-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/163-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/163-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/163-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/164-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/164-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/164-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/164-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/164-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/164-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/164-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/164-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/165-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/165-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/165-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/165-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/165-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/165-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/165-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/165-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/166-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/166-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/166-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/166-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/166-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/166-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/166-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/166-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/167-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/167-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/167-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/167-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/167-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/167-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/167-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/167-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/168-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/168-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/168-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/168-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/168-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/168-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/168-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/168-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/169-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/169-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/169-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/169-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/169-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/169-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/169-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/169-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/16-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/16-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/16-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/16-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/16-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/16-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/16-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/16-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/170-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/170-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/170-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/170-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/170-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/170-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/170-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/170-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/171-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/171-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/171-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/171-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/171-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/171-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/171-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/171-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/172-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/172-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/172-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/172-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/172-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/172-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/172-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/172-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/173-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/173-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/173-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/173-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/173-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/173-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/173-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/173-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/174-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/174-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/174-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/174-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/174-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/174-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/174-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/174-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/175-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/175-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/175-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/175-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/175-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/175-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/175-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/175-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/176-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/176-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/176-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/176-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/176-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/176-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/176-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/176-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/177-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/177-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/177-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/177-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/177-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/177-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/177-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/177-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/178-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/178-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/178-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/178-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/178-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/178-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/178-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/178-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/179-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/179-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/179-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/179-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/179-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/179-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/179-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/179-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/17-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/17-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/17-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/17-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/17-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/17-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/17-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/17-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/180-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/180-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/180-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/180-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/180-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/180-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/180-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/180-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/181-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/181-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/181-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/181-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/181-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/181-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/181-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/181-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/182-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/182-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/182-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/182-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/182-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/182-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/182-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/182-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/183-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/183-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/183-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/183-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/183-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/183-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/183-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/183-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/184-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/184-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/184-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/184-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/184-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/184-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/184-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/184-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/185-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/185-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/185-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/185-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/185-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/185-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/185-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/185-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/186-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/186-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/186-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/186-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/186-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/186-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/186-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/186-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/187-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/187-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/187-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/187-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/187-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/187-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/187-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/187-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/188-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/188-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/188-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/188-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/188-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/188-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/188-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/188-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/189-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/189-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/189-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/189-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/189-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/189-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/189-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/189-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/18-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/18-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/18-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/18-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/18-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/18-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/18-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/18-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/190-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/190-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/190-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/190-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/190-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/190-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/190-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/190-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/191-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/191-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/191-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/191-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/191-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/191-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/191-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/191-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/192-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/192-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/192-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/192-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/192-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/192-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/192-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/192-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/193-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/193-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/193-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/193-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/193-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/193-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/193-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/193-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/194-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/194-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/194-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/194-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/194-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/194-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/194-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/194-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/195-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/195-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/195-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/195-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/195-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/195-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/195-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/195-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/196-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/196-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/196-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/196-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/196-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/196-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/196-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/196-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/197-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/197-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/197-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/197-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/197-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/197-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/197-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/197-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/198-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/198-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/198-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/198-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/198-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/198-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/198-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/198-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/199-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/199-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/199-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/199-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/199-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/199-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/199-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/199-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/19-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/19-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/19-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/19-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/19-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/19-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/19-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/19-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/1-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/1-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/1-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/1-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/1-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/200-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/200-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/200-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/200-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/200-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/200-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/200-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/200-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/201-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/201-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/201-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/201-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/201-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/201-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/201-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/201-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/202-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/202-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/202-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/202-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/202-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/202-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/202-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/202-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/203-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/203-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/203-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/203-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/203-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/203-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/203-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/203-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/204-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/204-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/204-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/204-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/204-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/204-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/204-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/204-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/205-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/205-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/205-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/205-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/205-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/205-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/205-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/205-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/206-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/206-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/206-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/206-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/206-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/206-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/206-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/206-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/207-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/207-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/207-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/207-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/207-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/207-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/207-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/207-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/208-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/208-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/208-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/208-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/208-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/208-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/208-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/208-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/209-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/209-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/209-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/209-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/209-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/209-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/209-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/209-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/20-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/20-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/20-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/20-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/20-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/20-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/20-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/20-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/210-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/210-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/210-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/210-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/210-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/210-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/210-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/210-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/211-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/211-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/211-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/211-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/211-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/211-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/211-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/211-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/212-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/212-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/212-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/212-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/212-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/212-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/212-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/212-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/213-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/213-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/213-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/213-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/213-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/213-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/213-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/213-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/214-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/214-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/214-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/214-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/214-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/214-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/214-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/214-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/215-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/215-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/215-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/215-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/215-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/215-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/215-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/215-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/216-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/216-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/216-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/216-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/216-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/216-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/216-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/216-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/217-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/217-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/217-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/217-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/217-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/217-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/217-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/217-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/218-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/218-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/218-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/218-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/218-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/218-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/218-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/218-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/219-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/219-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/219-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/219-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/219-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/219-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/219-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/219-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/21-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/21-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/21-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/21-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/21-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/21-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/21-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/21-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/220-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/220-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/220-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/220-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/220-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/220-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/220-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/220-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/221-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/221-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/221-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/221-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/221-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/221-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/221-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/221-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/222-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/222-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/222-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/222-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/222-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/222-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/222-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/222-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/223-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/223-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/223-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/223-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/223-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/223-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/223-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/223-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/224-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/224-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/224-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/224-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/224-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/224-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/224-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/224-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/225-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/225-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/225-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/225-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/225-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/225-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/225-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/225-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/226-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/226-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/226-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/226-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/226-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/226-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/226-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/226-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/227-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/227-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/227-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/227-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/227-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/227-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/227-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/227-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/228-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/228-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/228-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/228-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/228-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/228-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/228-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/228-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/229-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/229-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/229-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/229-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/229-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/229-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/229-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/229-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/22-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/22-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/22-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/22-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/22-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/22-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/22-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/22-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/230-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/230-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/230-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/230-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/230-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/230-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/230-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/230-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/231-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/231-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/231-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/231-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/231-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/231-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/231-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/231-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/232-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/232-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/232-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/232-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/232-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/232-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/232-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/232-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/233-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/233-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/233-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/233-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/233-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/233-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/233-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/233-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/234-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/234-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/234-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/234-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/234-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/234-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/234-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/234-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/235-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/235-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/235-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/235-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/235-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/235-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/235-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/235-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/236-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/236-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/236-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/236-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/236-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/236-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/236-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/236-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/237-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/237-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/237-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/237-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/237-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/237-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/237-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/237-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/238-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/238-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/238-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/238-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/238-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/238-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/238-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/238-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/239-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/239-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/239-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/239-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/239-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/239-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/239-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/239-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/23-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/23-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/23-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/23-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/23-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/23-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/23-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/23-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/240-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/240-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/240-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/240-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/240-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/240-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/240-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/240-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/241-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/241-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/241-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/241-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/241-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/241-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/241-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/241-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/242-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/242-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/242-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/242-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/242-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/242-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/242-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/242-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/243-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/243-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/243-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/243-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/243-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/243-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/243-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/243-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/244-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/244-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/244-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/244-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/244-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/244-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/244-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/244-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/245-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/245-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/245-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/245-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/245-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/245-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/245-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/245-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/246-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/246-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/246-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/246-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/246-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/246-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/246-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/246-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/247-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/247-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/247-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/247-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/247-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/247-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/247-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/247-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/248-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/248-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/248-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/248-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/248-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/248-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/248-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/248-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/249-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/249-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/249-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/249-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/249-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/249-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/249-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/249-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/24-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/24-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/24-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/24-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/24-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/24-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/24-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/24-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/250-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/250-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/250-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/250-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/250-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/250-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/250-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/250-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/251-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/251-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/251-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/251-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/251-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/251-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/251-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/251-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/252-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/252-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/252-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/252-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/252-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/252-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/252-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/252-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/253-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/253-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/253-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/253-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/253-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/253-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/253-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/253-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/254-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/254-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/254-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/254-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/254-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/254-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/254-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/254-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/255-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/255-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/255-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/255-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/255-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/255-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/255-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/255-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/256-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/256-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/256-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/256-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/256-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/256-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/256-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/256-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/257-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/257-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/257-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/257-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/257-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/257-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/257-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/257-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/258-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/258-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/258-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/258-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/258-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/258-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/258-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/258-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/259-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/259-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/259-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/259-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/259-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/259-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/259-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/259-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/25-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/25-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/25-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/25-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/25-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/25-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/25-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/25-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/260-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/260-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/260-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/260-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/260-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/260-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/260-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/260-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/261-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/261-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/261-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/261-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/261-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/261-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/261-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/261-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/262-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/262-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/262-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/262-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/262-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/262-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/262-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/262-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/263-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/263-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/263-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/263-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/263-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/263-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/263-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/263-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/264-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/264-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/264-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/264-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/264-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/264-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/264-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/264-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/265-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/265-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/265-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/265-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/265-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/265-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/265-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/265-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/266-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/266-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/266-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/266-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/266-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/266-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/266-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/266-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/267-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/267-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/267-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/267-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/267-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/267-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/267-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/267-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/268-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/268-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/268-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/268-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/268-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/268-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/268-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/268-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/269-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/269-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/269-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/269-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/269-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/269-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/269-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/269-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/26-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/26-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/26-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/26-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/26-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/26-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/26-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/26-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/270-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/270-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/270-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/270-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/270-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/270-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/270-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/270-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/271-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/271-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/271-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/271-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/271-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/271-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/271-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/271-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/272-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/272-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/272-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/272-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/272-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/272-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/272-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/272-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/273-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/273-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/273-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/273-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/273-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/273-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/273-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/273-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/274-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/274-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/274-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/274-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/274-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/274-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/274-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/274-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/275-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/275-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/275-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/275-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/275-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/275-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/275-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/275-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/276-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/276-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/276-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/276-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/276-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/276-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/276-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/276-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/277-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/277-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/277-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/277-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/277-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/277-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/277-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/277-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/278-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/278-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/278-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/278-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/278-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/278-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/278-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/278-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/279-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/279-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/279-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/279-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/279-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/279-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/279-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/279-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/27-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/27-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/27-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/27-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/27-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/27-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/27-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/27-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/280-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/280-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/280-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/280-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/280-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/280-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/280-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/280-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/281-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/281-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/281-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/281-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/281-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/281-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/281-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/281-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/282-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/282-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/282-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/282-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/282-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/282-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/282-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/282-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/283-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/283-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/283-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/283-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/283-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/283-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/283-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/283-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/284-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/284-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/284-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/284-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/284-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/284-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/284-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/284-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/285-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/285-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/285-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/285-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/285-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/285-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/285-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/285-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/286-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/286-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/286-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/286-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/286-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/286-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/286-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/286-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/287-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/287-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/287-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/287-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/287-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/287-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/287-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/287-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/288-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/288-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/288-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/288-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/288-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/288-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/288-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/288-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/289-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/289-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/289-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/289-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/289-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/289-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/289-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/289-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/28-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/28-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/28-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/28-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/28-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/28-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/28-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/28-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/290-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/290-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/290-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/290-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/290-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/290-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/290-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/290-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/291-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/291-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/291-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/291-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/291-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/291-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/291-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/291-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/292-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/292-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/292-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/292-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/292-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/292-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/292-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/292-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/293-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/293-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/293-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/293-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/293-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/293-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/293-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/293-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/294-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/294-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/294-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/294-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/294-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/294-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/294-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/294-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/295-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/295-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/295-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/295-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/295-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/295-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/295-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/295-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/296-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/296-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/296-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/296-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/296-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/296-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/296-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/296-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/297-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/297-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/297-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/297-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/297-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/297-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/297-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/297-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/298-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/298-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/298-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/298-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/298-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/298-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/298-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/298-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/299-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/299-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/299-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/299-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/299-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/299-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/299-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/299-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/29-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/29-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/29-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/29-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/29-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/29-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/29-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/29-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/2-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/2-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/2-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/2-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/2-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/2-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/2-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/2-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/300-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/300-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/300-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/300-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/300-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/300-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/300-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/300-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/301-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/301-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/301-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/301-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/301-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/301-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/301-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/301-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/302-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/302-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/302-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/302-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/302-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/302-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/302-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/302-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/303-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/303-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/303-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/303-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/303-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/303-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/303-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/303-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/304-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/304-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/304-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/304-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/304-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/304-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/304-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/304-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/305-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/305-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/305-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/305-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/305-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/305-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/305-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/305-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/306-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/306-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/306-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/306-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/306-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/306-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/306-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/306-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/307-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/307-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/307-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/307-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/307-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/307-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/307-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/307-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/308-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/308-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/308-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/308-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/308-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/308-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/308-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/308-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/309-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/309-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/309-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/309-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/309-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/309-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/309-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/309-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/30-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/30-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/30-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/30-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/30-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/30-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/30-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/30-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/310-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/310-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/310-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/310-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/310-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/310-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/310-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/310-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/311-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/311-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/311-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/311-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/311-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/311-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/311-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/311-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/312-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/312-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/312-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/312-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/312-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/312-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/312-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/312-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/313-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/313-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/313-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/313-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/313-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/313-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/313-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/313-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/314-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/314-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/314-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/314-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/314-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/314-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/314-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/314-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/315-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/315-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/315-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/315-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/315-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/315-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/315-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/315-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/316-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/316-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/316-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/316-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/316-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/316-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/316-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/316-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/317-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/317-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/317-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/317-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/317-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/317-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/317-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/317-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/318-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/318-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/318-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/318-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/318-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/318-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/318-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/318-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/319-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/319-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/319-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/319-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/319-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/319-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/319-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/319-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/31-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/31-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/31-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/31-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/31-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/31-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/31-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/31-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/320-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/320-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/320-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/320-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/320-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/320-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/320-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/320-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/321-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/321-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/321-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/321-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/321-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/321-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/321-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/321-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/322-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/322-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/322-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/322-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/322-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/322-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/322-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/322-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/323-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/323-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/323-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/323-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/323-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/323-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/323-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/323-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/324-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/324-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/324-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/324-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/324-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/324-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/324-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/324-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/325-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/325-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/325-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/325-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/325-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/325-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/325-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/325-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/326-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/326-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/326-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/326-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/326-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/326-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/326-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/326-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/327-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/327-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/327-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/327-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/327-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/327-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/327-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/327-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/328-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/328-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/328-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/328-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/328-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/328-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/328-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/328-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/329-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/329-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/329-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/329-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/329-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/329-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/329-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/329-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/32-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/32-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/32-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/32-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/32-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/32-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/32-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/32-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/330-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/330-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/330-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/330-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/330-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/330-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/330-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/330-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/331-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/331-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/331-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/331-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/331-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/331-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/331-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/331-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/332-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/332-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/332-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/332-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/332-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/332-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/332-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/332-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/333-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/333-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/333-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/333-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/333-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/333-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/333-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/333-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/334-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/334-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/334-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/334-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/334-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/334-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/334-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/334-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/335-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/335-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/335-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/335-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/335-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/335-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/335-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/335-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/336-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/336-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/336-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/336-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/336-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/336-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/336-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/336-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/337-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/337-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/337-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/337-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/337-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/337-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/337-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/337-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/338-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/338-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/338-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/338-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/338-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/338-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/338-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/338-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/339-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/339-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/339-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/339-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/339-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/339-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/339-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/339-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/33-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/33-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/33-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/33-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/33-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/33-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/33-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/33-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/340-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/340-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/340-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/340-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/340-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/340-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/340-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/340-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/341-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/341-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/341-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/341-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/341-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/341-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/341-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/341-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/342-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/342-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/342-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/342-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/342-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/342-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/342-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/342-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/343-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/343-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/343-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/343-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/343-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/343-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/343-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/343-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/344-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/344-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/344-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/344-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/344-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/344-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/344-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/344-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/345-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/345-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/345-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/345-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/345-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/345-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/345-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/345-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/346-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/346-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/346-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/346-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/346-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/346-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/346-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/346-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/347-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/347-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/347-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/347-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/347-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/347-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/347-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/347-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/348-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/348-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/348-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/348-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/348-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/348-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/348-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/348-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/349-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/349-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/349-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/349-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/349-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/349-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/349-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/349-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/34-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/34-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/34-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/34-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/34-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/34-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/34-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/34-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/350-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/350-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/350-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/350-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/350-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/350-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/350-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/350-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/351-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/351-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/351-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/351-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/351-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/351-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/351-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/351-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/352-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/352-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/352-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/352-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/352-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/352-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/352-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/352-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/353-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/353-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/353-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/353-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/353-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/353-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/353-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/353-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/354-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/354-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/354-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/354-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/354-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/354-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/354-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/354-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/355-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/355-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/355-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/355-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/355-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/355-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/355-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/355-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/356-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/356-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/356-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/356-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/356-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/356-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/356-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/356-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/357-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/357-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/357-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/357-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/357-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/357-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/357-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/357-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/358-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/358-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/358-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/358-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/358-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/358-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/358-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/358-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/359-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/359-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/359-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/359-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/359-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/359-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/359-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/359-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/35-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/35-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/35-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/35-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/35-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/35-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/35-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/35-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/360-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/360-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/360-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/360-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/360-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/360-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/360-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/360-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/361-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/361-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/361-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/361-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/361-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/361-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/361-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/361-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/362-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/362-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/362-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/362-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/362-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/362-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/362-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/362-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/363-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/363-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/363-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/363-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/363-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/363-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/363-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/363-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/364-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/364-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/364-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/364-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/364-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/364-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/364-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/364-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/365-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/365-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/365-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/365-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/365-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/365-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/365-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/365-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/366-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/366-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/366-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/366-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/366-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/366-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/366-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/366-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/367-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/367-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/367-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/367-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/367-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/367-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/367-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/367-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/368-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/368-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/368-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/368-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/368-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/368-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/368-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/368-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/369-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/369-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/369-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/369-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/369-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/369-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/369-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/369-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/36-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/36-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/36-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/36-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/36-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/36-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/36-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/36-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/370-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/370-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/370-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/370-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/370-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/370-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/370-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/370-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/371-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/371-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/371-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/371-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/371-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/371-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/371-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/371-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/372-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/372-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/372-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/372-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/372-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/372-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/372-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/372-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/373-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/373-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/373-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/373-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/373-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/373-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/373-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/373-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/374-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/374-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/374-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/374-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/374-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/374-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/374-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/374-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/375-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/375-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/375-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/375-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/375-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/375-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/375-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/375-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/376-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/376-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/376-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/376-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/376-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/376-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/376-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/376-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/377-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/377-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/377-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/377-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/377-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/377-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/377-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/377-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/378-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/378-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/378-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/378-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/378-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/378-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/378-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/378-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/379-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/379-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/379-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/379-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/379-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/379-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/379-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/379-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/37-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/37-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/37-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/37-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/37-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/37-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/37-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/37-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/380-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/380-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/380-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/380-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/380-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/380-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/380-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/380-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/381-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/381-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/381-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/381-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/381-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/381-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/381-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/381-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/382-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/382-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/382-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/382-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/382-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/382-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/382-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/382-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/383-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/383-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/383-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/383-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/383-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/383-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/383-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/383-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/384-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/384-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/384-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/384-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/384-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/384-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/384-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/384-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/385-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/385-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/385-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/385-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/385-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/385-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/385-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/385-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/386-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/386-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/386-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/386-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/386-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/386-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/386-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/386-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/387-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/387-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/387-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/387-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/387-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/387-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/387-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/387-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/388-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/388-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/388-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/388-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/388-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/388-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/388-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/388-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/389-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/389-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/389-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/389-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/389-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/389-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/389-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/389-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/38-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/38-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/38-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/38-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/38-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/38-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/38-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/38-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/390-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/390-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/390-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/390-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/390-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/390-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/390-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/390-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/391-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/391-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/391-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/391-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/391-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/391-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/391-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/391-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/392-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/392-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/392-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/392-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/392-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/392-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/392-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/392-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/393-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/393-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/393-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/393-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/393-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/393-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/393-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/393-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/394-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/394-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/394-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/394-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/394-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/394-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/394-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/394-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/395-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/395-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/395-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/395-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/395-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/395-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/395-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/395-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/396-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/396-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/396-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/396-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/396-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/396-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/396-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/396-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/397-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/397-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/397-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/397-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/397-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/397-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/397-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/397-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/398-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/398-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/398-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/398-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/398-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/398-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/398-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/398-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/399-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/399-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/399-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/399-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/399-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/399-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/399-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/399-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/39-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/39-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/39-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/39-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/39-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/39-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/39-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/39-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/3-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/3-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/3-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/3-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/3-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/3-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/3-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/3-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/400-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/400-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/400-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/400-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/400-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/400-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/400-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/400-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/401-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/401-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/401-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/401-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/401-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/401-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/401-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/401-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/402-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/402-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/402-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/402-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/402-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/402-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/402-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/402-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/403-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/403-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/403-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/403-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/403-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/403-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/403-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/403-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/404-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/404-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/404-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/404-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/404-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/404-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/404-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/404-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/405-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/405-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/405-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/405-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/405-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/405-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/405-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/405-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/406-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/406-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/406-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/406-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/406-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/406-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/406-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/406-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/407-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/407-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/407-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/407-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/407-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/407-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/407-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/407-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/408-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/408-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/408-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/408-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/408-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/408-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/408-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/408-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/409-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/409-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/409-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/409-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/409-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/409-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/409-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/409-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/40-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/40-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/40-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/40-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/40-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/40-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/40-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/40-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/410-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/410-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/410-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/410-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/410-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/410-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/410-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/410-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/411-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/411-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/411-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/411-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/411-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/411-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/411-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/411-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/412-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/412-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/412-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/412-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/412-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/412-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/412-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/412-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/413-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/413-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/413-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/413-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/413-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/413-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/413-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/413-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/414-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/414-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/414-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/414-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/414-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/414-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/414-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/414-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/415-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/415-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/415-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/415-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/415-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/415-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/415-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/415-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/416-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/416-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/416-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/416-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/416-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/416-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/416-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/416-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/417-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/417-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/417-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/417-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/417-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/417-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/417-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/417-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/418-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/418-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/418-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/418-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/418-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/418-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/418-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/418-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/419-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/419-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/419-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/419-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/419-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/419-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/419-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/419-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/41-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/41-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/41-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/41-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/41-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/41-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/41-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/41-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/420-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/420-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/420-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/420-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/420-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/420-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/420-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/420-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/421-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/421-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/421-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/421-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/421-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/421-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/421-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/421-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/422-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/422-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/422-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/422-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/422-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/422-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/422-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/422-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/423-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/423-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/423-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/423-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/423-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/423-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/423-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/423-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/424-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/424-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/424-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/424-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/424-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/424-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/424-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/424-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/425-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/425-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/425-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/425-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/425-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/425-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/425-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/425-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/426-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/426-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/426-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/426-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/426-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/426-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/426-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/426-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/427-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/427-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/427-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/427-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/427-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/427-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/427-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/427-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/428-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/428-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/428-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/428-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/428-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/428-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/428-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/428-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/429-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/429-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/429-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/429-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/429-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/429-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/429-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/429-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/42-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/42-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/42-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/42-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/42-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/42-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/42-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/42-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/430-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/430-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/430-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/430-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/430-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/430-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/430-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/430-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/431-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/431-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/431-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/431-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/431-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/431-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/431-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/431-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/432-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/432-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/432-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/432-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/432-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/432-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/432-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/432-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/433-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/433-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/433-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/433-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/433-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/433-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/433-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/433-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/434-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/434-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/434-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/434-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/434-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/434-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/434-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/434-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/435-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/435-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/435-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/435-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/435-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/435-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/435-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/435-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/436-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/436-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/436-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/436-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/436-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/436-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/436-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/436-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/437-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/437-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/437-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/437-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/437-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/437-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/437-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/437-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/438-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/438-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/438-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/438-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/438-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/438-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/438-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/438-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/439-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/439-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/439-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/439-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/439-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/439-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/439-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/439-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/43-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/43-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/43-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/43-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/43-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/43-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/43-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/43-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/440-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/440-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/440-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/440-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/440-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/440-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/440-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/440-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/441-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/441-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/441-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/441-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/441-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/441-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/441-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/441-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/442-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/442-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/442-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/442-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/442-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/442-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/442-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/442-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/443-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/443-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/443-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/443-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/443-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/443-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/443-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/443-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/444-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/444-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/444-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/444-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/444-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/444-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/444-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/444-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/445-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/445-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/445-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/445-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/445-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/445-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/445-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/445-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/446-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/446-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/446-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/446-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/446-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/446-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/446-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/446-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/447-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/447-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/447-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/447-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/447-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/447-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/447-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/447-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/448-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/448-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/448-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/448-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/448-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/448-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/448-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/448-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/449-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/449-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/449-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/449-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/449-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/449-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/449-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/449-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/44-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/44-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/44-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/44-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/44-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/44-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/44-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/44-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/450-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/450-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/450-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/450-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/450-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/450-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/450-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/450-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/451-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/451-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/451-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/451-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/451-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/451-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/451-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/451-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/452-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/452-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/452-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/452-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/452-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/452-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/452-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/452-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/453-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/453-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/453-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/453-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/453-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/453-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/453-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/453-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/454-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/454-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/454-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/454-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/454-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/454-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/454-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/454-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/455-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/455-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/455-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/455-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/455-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/455-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/455-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/455-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/456-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/456-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/456-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/456-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/456-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/456-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/456-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/456-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/457-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/457-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/457-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/457-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/457-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/457-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/457-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/457-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/458-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/458-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/458-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/458-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/458-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/458-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/458-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/458-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/459-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/459-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/459-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/459-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/459-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/459-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/459-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/459-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/45-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/45-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/45-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/45-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/45-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/45-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/45-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/45-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/460-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/460-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/460-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/460-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/460-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/460-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/460-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/460-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/461-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/461-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/461-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/461-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/461-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/461-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/461-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/461-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/462-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/462-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/462-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/462-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/462-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/462-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/462-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/462-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/463-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/463-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/463-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/463-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/463-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/463-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/463-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/463-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/464-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/464-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/464-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/464-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/464-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/464-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/464-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/464-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/465-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/465-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/465-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/465-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/465-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/465-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/465-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/465-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/466-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/466-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/466-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/466-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/466-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/466-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/466-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/466-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/467-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/467-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/467-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/467-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/467-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/467-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/467-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/467-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/468-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/468-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/468-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/468-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/468-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/468-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/468-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/468-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/469-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/469-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/469-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/469-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/469-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/469-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/469-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/469-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/46-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/46-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/46-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/46-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/46-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/46-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/46-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/46-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/470-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/470-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/470-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/470-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/470-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/470-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/470-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/470-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/471-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/471-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/471-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/471-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/471-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/471-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/471-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/471-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/472-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/472-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/472-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/472-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/472-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/472-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/472-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/472-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/473-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/473-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/473-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/473-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/473-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/473-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/473-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/473-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/474-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/474-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/474-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/474-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/474-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/474-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/474-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/474-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/475-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/475-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/475-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/475-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/475-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/475-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/475-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/475-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/476-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/476-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/476-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/476-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/476-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/476-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/476-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/476-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/477-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/477-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/477-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/477-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/477-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/477-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/477-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/477-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/478-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/478-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/478-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/478-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/478-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/478-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/478-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/478-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/479-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/479-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/479-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/479-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/479-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/479-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/479-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/479-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/47-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/47-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/47-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/47-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/47-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/47-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/47-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/47-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/480-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/480-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/480-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/480-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/480-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/480-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/480-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/480-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/481-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/481-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/481-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/481-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/481-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/481-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/481-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/481-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/482-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/482-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/482-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/482-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/482-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/482-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/482-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/482-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/483-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/483-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/483-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/483-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/483-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/483-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/483-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/483-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/484-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/484-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/484-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/484-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/484-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/484-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/484-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/484-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/485-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/485-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/485-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/485-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/485-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/485-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/485-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/485-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/486-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/486-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/486-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/486-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/486-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/486-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/486-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/486-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/487-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/487-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/487-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/487-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/487-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/487-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/487-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/487-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/488-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/488-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/488-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/488-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/488-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/488-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/488-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/488-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/489-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/489-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/489-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/489-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/489-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/489-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/489-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/489-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/48-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/48-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/48-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/48-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/48-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/48-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/48-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/48-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/490-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/490-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/490-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/490-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/490-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/490-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/490-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/490-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/491-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/491-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/491-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/491-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/491-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/491-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/491-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/491-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/492-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/492-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/492-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/492-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/492-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/492-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/492-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/492-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/493-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/493-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/493-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/493-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/493-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/493-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/493-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/493-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/494-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/494-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/494-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/494-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/494-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/494-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/494-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/494-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/495-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/495-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/495-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/495-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/495-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/495-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/495-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/495-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/496-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/496-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/496-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/496-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/496-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/496-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/496-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/496-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/497-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/497-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/497-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/497-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/497-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/497-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/497-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/497-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/498-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/498-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/498-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/498-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/498-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/498-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/498-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/498-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/499-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/499-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/499-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/499-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/499-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/499-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/499-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/499-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/49-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/49-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/49-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/49-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/49-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/49-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/49-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/49-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/4-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/4-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/4-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/4-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/4-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/4-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/4-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/4-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/500-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/500-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/500-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/500-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/500-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/500-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/500-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/500-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/501-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/501-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/501-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/501-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/501-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/501-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/501-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/501-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/502-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/502-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/502-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/502-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/502-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/502-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/502-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/502-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/503-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/503-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/503-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/503-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/503-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/503-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/503-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/503-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/504-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/504-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/504-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/504-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/504-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/504-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/504-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/504-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/505-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/505-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/505-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/505-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/505-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/505-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/505-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/505-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/506-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/506-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/506-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/506-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/506-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/506-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/506-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/506-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/507-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/507-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/507-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/507-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/507-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/507-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/507-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/507-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/508-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/508-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/508-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/508-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/508-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/508-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/508-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/508-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/509-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/509-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/509-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/509-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/509-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/509-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/509-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/509-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/50-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/50-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/50-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/50-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/50-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/50-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/50-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/50-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/510-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/510-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/510-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/510-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/510-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/510-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/510-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/510-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/511-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/511-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/511-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/511-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/511-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/511-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/511-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/511-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/512-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/512-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/512-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/512-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/512-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/512-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/512-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/512-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/513-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/513-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/513-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/513-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/513-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/513-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/513-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/513-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/514-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/514-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/514-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/514-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/514-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/514-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/514-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/514-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/515-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/515-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/515-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/515-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/515-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/515-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/515-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/515-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/516-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/516-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/516-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/516-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/516-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/516-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/516-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/516-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/517-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/517-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/517-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/517-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/517-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/517-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/517-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/517-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/518-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/518-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/518-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/518-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/518-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/518-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/518-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/518-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/519-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/519-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/519-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/519-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/519-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/519-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/519-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/519-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/51-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/51-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/51-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/51-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/51-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/51-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/51-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/51-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/520-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/520-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/520-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/520-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/520-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/520-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/520-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/520-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/521-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/521-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/521-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/521-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/521-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/521-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/521-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/521-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/522-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/522-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/522-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/522-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/522-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/522-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/522-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/522-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/523-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/523-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/523-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/523-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/523-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/523-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/523-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/523-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/524-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/524-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/524-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/524-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/524-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/524-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/524-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/524-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/525-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/525-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/525-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/525-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/525-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/525-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/525-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/525-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/526-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/526-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/526-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/526-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/526-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/526-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/526-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/526-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/527-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/527-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/527-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/527-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/527-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/527-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/527-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/527-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/528-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/528-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/528-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/528-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/528-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/528-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/528-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/528-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/529-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/529-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/529-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/529-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/529-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/529-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/529-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/529-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/52-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/52-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/52-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/52-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/52-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/52-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/52-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/52-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/530-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/530-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/530-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/530-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/530-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/530-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/530-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/530-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/531-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/531-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/531-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/531-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/531-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/531-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/531-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/531-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/532-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/532-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/532-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/532-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/532-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/532-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/532-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/532-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/533-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/533-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/533-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/533-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/533-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/533-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/533-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/533-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/534-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/534-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/534-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/534-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/534-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/534-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/534-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/534-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/535-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/535-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/535-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/535-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/535-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/535-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/535-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/535-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/536-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/536-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/536-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/536-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/536-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/536-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/536-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/536-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/537-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/537-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/537-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/537-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/537-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/537-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/537-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/537-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/538-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/538-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/538-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/538-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/538-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/538-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/538-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/538-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/539-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/539-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/539-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/539-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/539-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/539-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/539-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/539-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/53-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/53-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/53-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/53-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/53-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/53-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/53-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/53-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/540-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/540-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/540-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/540-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/540-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/540-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/540-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/540-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/541-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/541-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/541-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/541-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/541-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/541-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/541-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/541-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/542-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/542-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/542-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/542-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/542-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/542-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/542-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/542-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/543-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/543-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/543-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/543-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/543-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/543-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/543-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/543-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/544-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/544-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/544-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/544-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/544-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/544-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/544-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/544-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/545-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/545-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/545-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/545-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/545-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/545-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/545-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/545-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/546-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/546-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/546-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/546-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/546-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/546-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/546-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/546-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/547-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/547-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/547-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/547-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/547-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/547-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/547-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/547-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/548-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/548-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/548-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/548-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/548-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/548-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/548-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/548-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/549-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/549-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/549-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/549-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/549-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/549-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/549-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/549-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/54-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/54-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/54-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/54-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/54-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/54-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/54-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/54-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/550-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/550-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/550-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/550-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/550-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/550-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/550-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/550-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/551-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/551-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/551-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/551-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/551-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/551-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/551-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/551-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/552-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/552-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/552-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/552-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/552-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/552-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/552-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/552-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/553-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/553-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/553-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/553-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/553-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/553-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/553-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/553-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/554-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/554-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/554-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/554-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/554-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/554-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/554-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/554-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/555-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/555-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/555-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/555-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/555-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/555-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/555-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/555-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/556-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/556-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/556-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/556-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/556-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/556-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/556-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/556-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/557-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/557-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/557-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/557-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/557-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/557-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/557-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/557-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/558-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/558-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/558-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/558-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/558-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/558-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/558-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/558-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/559-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/559-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/559-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/559-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/559-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/559-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/559-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/559-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/55-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/55-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/55-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/55-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/55-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/55-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/55-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/55-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/560-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/560-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/560-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/560-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/560-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/560-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/560-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/560-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/561-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/561-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/561-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/561-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/561-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/561-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/561-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/561-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/562-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/562-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/562-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/562-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/562-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/562-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/562-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/562-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/563-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/563-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/563-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/563-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/563-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/563-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/563-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/563-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/564-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/564-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/564-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/564-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/564-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/564-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/564-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/564-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/565-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/565-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/565-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/565-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/565-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/565-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/565-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/565-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/566-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/566-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/566-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/566-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/566-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/566-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/566-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/566-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/567-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/567-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/567-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/567-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/567-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/567-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/567-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/567-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/568-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/568-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/568-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/568-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/568-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/568-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/568-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/568-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/569-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/569-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/569-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/569-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/569-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/569-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/569-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/569-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/56-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/56-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/56-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/56-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/56-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/56-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/56-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/56-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/570-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/570-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/570-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/570-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/570-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/570-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/570-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/570-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/571-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/571-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/571-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/571-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/571-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/571-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/571-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/571-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/572-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/572-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/572-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/572-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/572-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/572-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/572-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/572-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/573-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/573-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/573-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/573-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/573-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/573-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/573-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/573-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/574-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/574-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/574-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/574-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/574-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/574-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/574-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/574-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/575-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/575-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/575-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/575-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/575-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/575-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/575-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/575-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/576-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/576-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/576-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/576-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/576-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/576-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/576-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/576-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/577-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/577-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/577-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/577-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/577-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/577-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/577-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/577-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/578-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/578-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/578-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/578-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/578-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/578-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/578-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/578-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/579-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/579-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/579-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/579-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/579-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/579-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/579-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/579-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/57-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/57-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/57-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/57-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/57-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/57-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/57-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/57-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/580-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/580-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/580-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/580-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/580-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/580-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/580-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/580-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/581-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/581-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/581-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/581-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/581-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/581-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/581-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/581-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/582-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/582-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/582-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/582-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/582-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/582-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/582-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/582-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/583-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/583-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/583-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/583-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/583-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/583-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/583-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/583-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/584-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/584-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/584-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/584-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/584-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/584-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/584-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/584-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/585-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/585-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/585-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/585-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/585-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/585-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/585-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/585-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/586-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/586-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/586-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/586-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/586-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/586-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/586-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/586-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/587-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/587-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/587-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/587-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/587-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/587-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/587-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/587-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/588-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/588-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/588-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/588-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/588-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/588-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/588-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/588-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/589-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/589-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/589-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/589-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/589-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/589-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/589-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/589-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/58-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/58-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/58-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/58-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/58-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/58-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/58-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/58-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/590-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/590-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/590-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/590-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/590-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/590-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/590-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/590-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/591-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/591-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/591-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/591-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/591-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/591-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/591-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/591-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/592-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/592-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/592-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/592-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/592-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/592-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/592-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/592-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/593-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/593-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/593-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/593-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/593-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/593-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/593-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/593-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/594-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/594-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/594-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/594-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/594-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/594-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/594-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/594-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/595-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/595-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/595-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/595-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/595-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/595-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/595-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/595-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/596-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/596-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/596-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/596-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/596-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/596-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/596-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/596-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/597-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/597-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/597-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/597-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/597-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/597-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/597-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/597-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/598-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/598-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/598-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/598-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/598-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/598-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/598-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/598-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/599-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/599-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/599-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/599-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/599-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/599-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/599-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/599-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/59-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/59-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/59-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/59-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/59-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/59-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/59-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/59-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/5-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/5-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/5-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/5-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/5-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/5-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/5-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/5-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/600-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/600-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/600-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/600-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/600-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/600-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/600-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/600-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/601-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/601-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/601-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/601-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/601-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/601-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/601-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/601-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/602-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/602-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/602-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/602-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/602-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/602-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/602-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/602-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/603-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/603-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/603-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/603-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/603-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/603-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/603-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/603-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/604-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/604-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/604-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/604-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/604-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/604-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/604-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/604-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/605-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/605-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/605-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/605-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/605-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/605-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/605-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/605-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/606-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/606-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/606-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/606-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/606-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/606-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/606-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/606-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/607-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/607-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/607-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/607-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/607-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/607-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/607-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/607-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/608-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/608-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/608-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/608-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/608-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/608-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/608-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/608-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/609-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/609-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/609-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/609-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/609-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/609-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/609-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/609-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/60-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/60-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/60-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/60-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/60-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/60-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/60-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/60-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/610-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/610-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/610-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/610-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/610-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/610-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/610-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/610-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/611-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/611-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/611-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/611-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/612-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/612-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/612-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/612-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/612-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/612-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/612-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/612-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/613-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/613-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/613-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/613-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/614-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/614-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/614-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/614-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/615-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/615-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/615-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/615-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/615-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/615-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/615-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/615-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/616-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/616-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/616-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/616-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/617-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/617-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/617-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/617-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/618-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/618-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/618-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/618-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/619-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/619-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/619-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/619-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/61-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/61-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/61-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/61-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/61-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/61-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/61-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/61-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/620-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/620-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/620-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/620-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/621-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/621-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/621-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/621-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/621-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/621-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/621-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/621-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/622-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/622-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/622-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/622-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/622-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/622-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/622-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/622-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/623-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/623-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/623-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/623-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/623-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/623-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/623-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/623-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/624-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/624-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/624-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/624-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/624-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/624-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/624-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/624-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/625-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/625-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/625-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/625-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/625-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/625-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/625-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/625-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/626-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/626-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/626-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/626-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/626-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/626-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/626-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/626-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/627-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/627-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/627-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/627-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/627-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/627-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/627-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/627-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/628-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/628-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/628-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/628-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/628-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/628-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/628-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/628-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/629-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/629-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/629-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/629-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/629-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/629-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/629-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/629-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/62-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/62-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/62-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/62-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/630-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/630-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/630-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/630-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/630-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/630-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/630-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/630-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/63-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/63-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/63-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/63-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/63-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/63-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/63-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/63-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/6-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/6-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/6-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/6-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/6-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/6-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/6-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/6-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/895-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/895-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/895-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/895-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/895-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/895-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/895-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/895-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/896-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/896-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/896-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/896-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/896-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/896-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/896-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/896-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/897-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/897-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/897-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/897-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/897-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/897-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/897-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/897-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/898-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/898-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/898-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/898-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/898-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/898-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/898-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/898-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/899-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/899-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/899-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/899-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/899-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/899-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/899-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/899-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/900-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/900-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/900-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/900-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/900-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/900-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/900-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/900-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/901-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/901-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/901-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/901-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/901-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/901-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/901-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/901-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/902-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/902-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/902-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/902-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/902-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/902-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/902-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/902-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/903-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/903-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/903-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/903-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/903-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/903-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/903-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/903-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/904-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/904-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/904-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/904-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/904-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/904-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/904-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/904-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/905-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/905-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/905-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/905-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/905-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/905-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/905-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/905-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/906-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/906-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/906-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/906-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/906-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/906-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/906-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/906-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/907-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/907-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/907-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/907-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/907-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/907-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/907-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/907-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/908-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/908-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/908-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/908-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/908-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/908-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/908-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/908-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/909-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/909-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/909-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/909-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/909-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/909-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/909-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/909-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/90-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/90-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/90-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/90-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/90-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/90-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/90-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/90-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/910-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/910-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/910-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/910-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/910-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/910-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/910-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/910-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/911-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/911-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/911-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/911-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/911-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/911-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/911-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/911-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/912-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/912-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/912-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/912-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/912-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/912-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/912-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/912-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/913-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/913-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/913-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/913-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/913-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/913-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/913-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/913-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/914-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/914-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/914-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/914-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/914-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/914-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/914-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/914-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/915-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/915-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/915-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/915-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/915-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/915-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/915-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/915-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/916-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/916-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/916-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/916-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/916-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/916-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/916-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/916-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/917-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/917-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/917-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/917-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/917-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/917-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/917-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/917-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/918-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/918-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/918-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/918-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/918-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/918-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/918-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/918-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/919-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/919-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/919-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/919-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/919-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/919-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/919-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/919-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/91-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/91-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/91-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/91-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/91-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/91-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/91-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/91-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/920-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/920-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/920-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/920-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/920-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/920-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/920-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/920-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/921-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/921-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/921-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/921-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/921-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/921-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/921-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/921-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/922-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/922-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/922-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/922-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/922-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/922-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/922-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/922-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/923-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/923-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/923-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/923-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/923-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/923-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/923-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/923-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/924-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/924-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/924-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/924-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/924-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/924-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/924-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/924-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/925-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/925-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/925-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/925-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/925-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/925-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/925-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/925-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/926-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/926-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/926-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/926-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/926-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/926-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/926-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/926-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/927-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/927-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/927-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/927-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/927-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/927-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/927-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/927-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/928-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/928-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/928-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/928-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/928-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/928-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/928-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/928-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/929-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/929-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/929-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/929-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/929-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/929-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/929-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/929-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/92-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/92-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/92-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/92-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/92-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/92-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/92-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/92-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/930-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/930-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/930-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/930-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/930-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/930-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/930-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/930-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/931-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/931-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/931-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/931-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/931-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/931-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/931-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/931-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/932-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/932-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/932-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/932-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/932-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/932-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/932-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/932-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/933-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/933-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/933-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/933-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/933-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/933-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/933-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/933-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/934-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/934-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/934-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/934-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/934-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/934-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/934-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/934-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/935-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/935-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/935-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/935-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/935-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/935-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/935-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/935-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/936-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/936-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/936-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/936-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/936-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/936-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/936-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/936-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/937-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/937-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/937-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/937-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/937-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/937-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/937-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/937-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/938-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/938-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/938-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/938-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/938-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/938-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/938-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/938-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/939-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/939-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/939-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/939-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/939-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/939-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/939-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/939-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/93-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/93-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/93-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/93-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/93-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/93-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/93-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/93-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/940-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/940-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/940-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/940-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/940-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/940-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/940-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/940-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/941-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/941-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/941-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/941-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/941-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/941-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/941-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/941-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/942-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/942-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/942-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/942-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/942-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/942-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/942-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/942-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/943-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/943-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/943-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/943-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/943-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/943-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/943-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/943-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/944-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/944-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/944-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/944-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/944-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/944-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/944-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/944-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/945-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/945-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/945-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/945-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/945-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/945-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/945-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/945-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/946-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/946-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/946-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/946-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/946-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/946-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/946-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/946-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/947-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/947-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/947-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/947-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/947-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/947-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/947-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/947-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/948-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/948-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/948-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/948-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/948-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/948-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/948-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/948-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/949-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/949-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/949-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/949-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/949-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/949-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/949-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/949-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/94-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/94-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/94-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/94-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/94-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/94-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/94-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/94-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/950-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/950-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/950-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/950-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/950-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/950-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/950-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/950-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/951-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/951-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/951-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/951-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/951-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/951-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/951-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/951-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/952-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/952-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/952-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/952-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/952-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/952-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/952-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/952-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/953-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/953-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/953-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/953-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/953-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/953-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/953-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/953-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/954-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/954-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/954-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/954-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/954-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/954-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/954-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/954-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/955-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/955-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/955-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/955-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/955-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/955-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/955-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/955-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/956-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/956-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/956-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/956-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/956-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/956-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/956-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/956-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/957-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/957-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/957-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/957-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/957-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/957-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/957-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/957-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/958-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/958-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/958-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/958-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/958-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/958-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/958-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/958-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/959-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/959-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/959-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/959-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/959-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/959-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/959-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/959-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/95-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/95-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/95-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/95-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/95-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/95-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/95-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/95-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/960-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/960-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/960-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/960-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/960-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/960-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/960-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/960-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/961-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/961-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/961-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/961-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/961-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/961-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/961-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/961-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/962-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/962-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/962-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/962-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/962-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/962-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/962-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/962-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/963-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/963-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/963-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/963-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/963-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/963-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/963-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/963-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/964-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/964-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/964-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/964-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/964-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/964-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/964-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/964-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/965-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/965-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/965-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/965-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/965-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/965-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/965-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/965-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/966-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/966-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/966-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/966-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/966-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/966-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/966-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/966-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/967-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/967-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/967-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/967-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/967-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/967-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/967-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/967-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/968-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/968-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/968-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/968-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/968-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/968-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/968-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/968-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/969-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/969-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/96-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/96-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/96-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/96-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/96-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/96-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/96-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/96-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/970-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/970-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/970-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/970-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/970-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/970-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/970-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/970-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/971-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/971-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/971-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/971-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/971-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/971-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/971-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/971-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/972-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/972-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/972-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/972-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/972-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/972-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/972-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/972-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/973-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/973-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/973-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/973-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/973-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/973-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/973-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/973-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/974-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/974-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/974-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/974-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/974-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/974-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/974-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/974-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/976-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/976-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/976-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/976-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/976-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/976-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/976-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/976-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/977-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/977-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/977-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/977-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/977-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/977-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/977-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/977-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/978-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/978-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/978-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/978-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/978-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/978-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/978-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/978-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/979-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/979-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/979-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/979-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/979-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/979-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/979-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/979-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/97-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/97-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/97-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/97-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/97-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/97-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/97-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/97-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/980-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/980-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/980-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/980-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/980-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/980-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/980-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/980-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/981-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/981-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/981-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/981-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/981-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/981-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/981-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/981-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/982-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/982-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/982-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/982-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/982-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/982-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/982-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/982-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/983-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/983-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/983-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/983-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/983-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/983-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/983-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/983-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/984-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/984-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/985-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/985-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/986-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/986-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/987-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/987-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/987-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/987-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/987-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/987-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/987-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/987-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/988-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/988-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/989-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/989-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/989-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/989-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/989-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/989-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/989-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/989-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/98-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/98-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/98-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/98-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/98-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/98-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/98-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/98-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/990-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/990-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/991-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/991-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/992-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/992-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/993-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/993-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/993-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/993-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/993-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/993-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/993-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/993-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/994-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/994-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/994-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/994-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/994-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/994-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/994-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/994-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/995-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/995-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/995-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/995-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/995-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/995-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/995-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/995-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/996-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/996-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/996-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/996-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/996-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/996-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/996-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/996-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/997-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/997-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/997-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/997-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/997-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/997-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/997-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/997-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/998-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/998-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/998-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/998-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/998-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/998-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/998-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/998-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/999-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/999-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/999-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/999-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/999-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/999-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/999-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/999-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/99-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/99-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/9-batch_output_0 -s SGNex_A549_directRNA_replicate4_run1/9-batch_output_0-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/9-batch_output_1 -s SGNex_A549_directRNA_replicate4_run1/9-batch_output_1-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/9-batch_output_2 -s SGNex_A549_directRNA_replicate4_run1/9-batch_output_2-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none /oak/stanford/groups/akundaje/marinovg/programs/ont-guppy-cpu_6.0.1_linux64/bin/guppy_basecaller -i SGNex_A549_directRNA_replicate4_run1/9-batch_output_3 -s SGNex_A549_directRNA_replicate4_run1/9-batch_output_3-out --cpu_threads_per_caller 5 --config rna_r9.4.1_70bps_hac.cfg --recursive --fast5_out --trim_strategy none