single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep10-multiFAST5 --filename_base batch_output-adult_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep110-multiFAST5 --filename_base batch_output-adult_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep111-multiFAST5 --filename_base batch_output-adult_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep112-multiFAST5 --filename_base batch_output-adult_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep113-multiFAST5 --filename_base batch_output-adult_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep114-multiFAST5 --filename_base batch_output-adult_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep115-multiFAST5 --filename_base batch_output-adult_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep116-multiFAST5 --filename_base batch_output-adult_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep117-multiFAST5 --filename_base batch_output-adult_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep118-multiFAST5 --filename_base batch_output-adult_rep118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep119-multiFAST5 --filename_base batch_output-adult_rep119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep11-multiFAST5 --filename_base batch_output-adult_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep120-multiFAST5 --filename_base batch_output-adult_rep120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep121-multiFAST5 --filename_base batch_output-adult_rep121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep122-multiFAST5 --filename_base batch_output-adult_rep122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep123-multiFAST5 --filename_base batch_output-adult_rep123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep124-multiFAST5 --filename_base batch_output-adult_rep124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep125-multiFAST5 --filename_base batch_output-adult_rep125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep126-multiFAST5 --filename_base batch_output-adult_rep126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep127-multiFAST5 --filename_base batch_output-adult_rep127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep128-multiFAST5 --filename_base batch_output-adult_rep128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep129-multiFAST5 --filename_base batch_output-adult_rep129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep12-multiFAST5 --filename_base batch_output-adult_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep130-multiFAST5 --filename_base batch_output-adult_rep130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep13-multiFAST5 --filename_base batch_output-adult_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep14-multiFAST5 --filename_base batch_output-adult_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep15-multiFAST5 --filename_base batch_output-adult_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep16-multiFAST5 --filename_base batch_output-adult_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep17-multiFAST5 --filename_base batch_output-adult_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep18-multiFAST5 --filename_base batch_output-adult_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep1/adult_rep19-multiFAST5 --filename_base batch_output-adult_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep20-multiFAST5 --filename_base batch_output-adult_rep20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep210-multiFAST5 --filename_base batch_output-adult_rep210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep211-multiFAST5 --filename_base batch_output-adult_rep211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep212-multiFAST5 --filename_base batch_output-adult_rep212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep213-multiFAST5 --filename_base batch_output-adult_rep213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep214-multiFAST5 --filename_base batch_output-adult_rep214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep215-multiFAST5 --filename_base batch_output-adult_rep215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep216-multiFAST5 --filename_base batch_output-adult_rep216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep217-multiFAST5 --filename_base batch_output-adult_rep217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep218-multiFAST5 --filename_base batch_output-adult_rep218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep219-multiFAST5 --filename_base batch_output-adult_rep219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep21-multiFAST5 --filename_base batch_output-adult_rep21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep220-multiFAST5 --filename_base batch_output-adult_rep220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep221-multiFAST5 --filename_base batch_output-adult_rep221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep222-multiFAST5 --filename_base batch_output-adult_rep222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep223-multiFAST5 --filename_base batch_output-adult_rep223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep224-multiFAST5 --filename_base batch_output-adult_rep224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep225-multiFAST5 --filename_base batch_output-adult_rep225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep226-multiFAST5 --filename_base batch_output-adult_rep226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep227-multiFAST5 --filename_base batch_output-adult_rep227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep228-multiFAST5 --filename_base batch_output-adult_rep228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep229-multiFAST5 --filename_base batch_output-adult_rep229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep22-multiFAST5 --filename_base batch_output-adult_rep22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep230-multiFAST5 --filename_base batch_output-adult_rep230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep231-multiFAST5 --filename_base batch_output-adult_rep231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep232-multiFAST5 --filename_base batch_output-adult_rep232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep233-multiFAST5 --filename_base batch_output-adult_rep233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep234-multiFAST5 --filename_base batch_output-adult_rep234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep235-multiFAST5 --filename_base batch_output-adult_rep235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep236-multiFAST5 --filename_base batch_output-adult_rep236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep237-multiFAST5 --filename_base batch_output-adult_rep237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep238-multiFAST5 --filename_base batch_output-adult_rep238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep239-multiFAST5 --filename_base batch_output-adult_rep239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep23-multiFAST5 --filename_base batch_output-adult_rep23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep240-multiFAST5 --filename_base batch_output-adult_rep240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep241-multiFAST5 --filename_base batch_output-adult_rep241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep242-multiFAST5 --filename_base batch_output-adult_rep242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep243-multiFAST5 --filename_base batch_output-adult_rep243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep244-multiFAST5 --filename_base batch_output-adult_rep244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep245-multiFAST5 --filename_base batch_output-adult_rep245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep246-multiFAST5 --filename_base batch_output-adult_rep246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep247-multiFAST5 --filename_base batch_output-adult_rep247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep248-multiFAST5 --filename_base batch_output-adult_rep248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep249-multiFAST5 --filename_base batch_output-adult_rep249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep24-multiFAST5 --filename_base batch_output-adult_rep24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep250-multiFAST5 --filename_base batch_output-adult_rep250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep251-multiFAST5 --filename_base batch_output-adult_rep251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep252-multiFAST5 --filename_base batch_output-adult_rep252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep253-multiFAST5 --filename_base batch_output-adult_rep253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep254-multiFAST5 --filename_base batch_output-adult_rep254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep255-multiFAST5 --filename_base batch_output-adult_rep255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep256-multiFAST5 --filename_base batch_output-adult_rep256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep257-multiFAST5 --filename_base batch_output-adult_rep257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep258-multiFAST5 --filename_base batch_output-adult_rep258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep259-multiFAST5 --filename_base batch_output-adult_rep259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep25-multiFAST5 --filename_base batch_output-adult_rep25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep260-multiFAST5 --filename_base batch_output-adult_rep260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep261-multiFAST5 --filename_base batch_output-adult_rep261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep262-multiFAST5 --filename_base batch_output-adult_rep262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep263-multiFAST5 --filename_base batch_output-adult_rep263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep264-multiFAST5 --filename_base batch_output-adult_rep264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep265-multiFAST5 --filename_base batch_output-adult_rep265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep266-multiFAST5 --filename_base batch_output-adult_rep266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep267-multiFAST5 --filename_base batch_output-adult_rep267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep268-multiFAST5 --filename_base batch_output-adult_rep268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep269-multiFAST5 --filename_base batch_output-adult_rep269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep26-multiFAST5 --filename_base batch_output-adult_rep26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep270-multiFAST5 --filename_base batch_output-adult_rep270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep271-multiFAST5 --filename_base batch_output-adult_rep271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep272-multiFAST5 --filename_base batch_output-adult_rep272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep27-multiFAST5 --filename_base batch_output-adult_rep27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep28-multiFAST5 --filename_base batch_output-adult_rep28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/adult_rep2/adult_rep29-multiFAST5 --filename_base batch_output-adult_rep29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep10-multiFAST5 --filename_base batch_output-L1_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep110-multiFAST5 --filename_base batch_output-L1_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep111-multiFAST5 --filename_base batch_output-L1_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep112-multiFAST5 --filename_base batch_output-L1_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep113-multiFAST5 --filename_base batch_output-L1_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep114-multiFAST5 --filename_base batch_output-L1_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep115-multiFAST5 --filename_base batch_output-L1_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep116-multiFAST5 --filename_base batch_output-L1_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep117-multiFAST5 --filename_base batch_output-L1_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep118-multiFAST5 --filename_base batch_output-L1_rep118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep119-multiFAST5 --filename_base batch_output-L1_rep119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep11-multiFAST5 --filename_base batch_output-L1_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep120-multiFAST5 --filename_base batch_output-L1_rep120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep121-multiFAST5 --filename_base batch_output-L1_rep121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep122-multiFAST5 --filename_base batch_output-L1_rep122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep123-multiFAST5 --filename_base batch_output-L1_rep123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep124-multiFAST5 --filename_base batch_output-L1_rep124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep125-multiFAST5 --filename_base batch_output-L1_rep125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep126-multiFAST5 --filename_base batch_output-L1_rep126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep127-multiFAST5 --filename_base batch_output-L1_rep127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep128-multiFAST5 --filename_base batch_output-L1_rep128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep129-multiFAST5 --filename_base batch_output-L1_rep129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep12-multiFAST5 --filename_base batch_output-L1_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep130-multiFAST5 --filename_base batch_output-L1_rep130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep131-multiFAST5 --filename_base batch_output-L1_rep131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep132-multiFAST5 --filename_base batch_output-L1_rep132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep133-multiFAST5 --filename_base batch_output-L1_rep133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep134-multiFAST5 --filename_base batch_output-L1_rep134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep135-multiFAST5 --filename_base batch_output-L1_rep135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep136-multiFAST5 --filename_base batch_output-L1_rep136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep137-multiFAST5 --filename_base batch_output-L1_rep137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep138-multiFAST5 --filename_base batch_output-L1_rep138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep139-multiFAST5 --filename_base batch_output-L1_rep139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep13-multiFAST5 --filename_base batch_output-L1_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep140-multiFAST5 --filename_base batch_output-L1_rep140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep141-multiFAST5 --filename_base batch_output-L1_rep141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep142-multiFAST5 --filename_base batch_output-L1_rep142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep14-multiFAST5 --filename_base batch_output-L1_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep15-multiFAST5 --filename_base batch_output-L1_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep16-multiFAST5 --filename_base batch_output-L1_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep17-multiFAST5 --filename_base batch_output-L1_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep18-multiFAST5 --filename_base batch_output-L1_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep1/L1_rep19-multiFAST5 --filename_base batch_output-L1_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep20-multiFAST5 --filename_base batch_output-L1_rep20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep210-multiFAST5 --filename_base batch_output-L1_rep210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep211-multiFAST5 --filename_base batch_output-L1_rep211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep212-multiFAST5 --filename_base batch_output-L1_rep212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep213-multiFAST5 --filename_base batch_output-L1_rep213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep214-multiFAST5 --filename_base batch_output-L1_rep214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep215-multiFAST5 --filename_base batch_output-L1_rep215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep216-multiFAST5 --filename_base batch_output-L1_rep216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep217-multiFAST5 --filename_base batch_output-L1_rep217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep218-multiFAST5 --filename_base batch_output-L1_rep218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep219-multiFAST5 --filename_base batch_output-L1_rep219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep21-multiFAST5 --filename_base batch_output-L1_rep21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep220-multiFAST5 --filename_base batch_output-L1_rep220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep221-multiFAST5 --filename_base batch_output-L1_rep221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep222-multiFAST5 --filename_base batch_output-L1_rep222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep223-multiFAST5 --filename_base batch_output-L1_rep223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep224-multiFAST5 --filename_base batch_output-L1_rep224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep225-multiFAST5 --filename_base batch_output-L1_rep225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep226-multiFAST5 --filename_base batch_output-L1_rep226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep227-multiFAST5 --filename_base batch_output-L1_rep227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep228-multiFAST5 --filename_base batch_output-L1_rep228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep229-multiFAST5 --filename_base batch_output-L1_rep229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep22-multiFAST5 --filename_base batch_output-L1_rep22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep230-multiFAST5 --filename_base batch_output-L1_rep230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep231-multiFAST5 --filename_base batch_output-L1_rep231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep232-multiFAST5 --filename_base batch_output-L1_rep232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep233-multiFAST5 --filename_base batch_output-L1_rep233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep234-multiFAST5 --filename_base batch_output-L1_rep234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep235-multiFAST5 --filename_base batch_output-L1_rep235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep236-multiFAST5 --filename_base batch_output-L1_rep236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep237-multiFAST5 --filename_base batch_output-L1_rep237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep238-multiFAST5 --filename_base batch_output-L1_rep238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep239-multiFAST5 --filename_base batch_output-L1_rep239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep23-multiFAST5 --filename_base batch_output-L1_rep23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep240-multiFAST5 --filename_base batch_output-L1_rep240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep241-multiFAST5 --filename_base batch_output-L1_rep241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep242-multiFAST5 --filename_base batch_output-L1_rep242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep243-multiFAST5 --filename_base batch_output-L1_rep243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep244-multiFAST5 --filename_base batch_output-L1_rep244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep245-multiFAST5 --filename_base batch_output-L1_rep245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep246-multiFAST5 --filename_base batch_output-L1_rep246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep247-multiFAST5 --filename_base batch_output-L1_rep247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep248-multiFAST5 --filename_base batch_output-L1_rep248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep249-multiFAST5 --filename_base batch_output-L1_rep249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep24-multiFAST5 --filename_base batch_output-L1_rep24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep250-multiFAST5 --filename_base batch_output-L1_rep250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep251-multiFAST5 --filename_base batch_output-L1_rep251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep252-multiFAST5 --filename_base batch_output-L1_rep252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep253-multiFAST5 --filename_base batch_output-L1_rep253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep254-multiFAST5 --filename_base batch_output-L1_rep254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep255-multiFAST5 --filename_base batch_output-L1_rep255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep256-multiFAST5 --filename_base batch_output-L1_rep256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep257-multiFAST5 --filename_base batch_output-L1_rep257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep258-multiFAST5 --filename_base batch_output-L1_rep258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep259-multiFAST5 --filename_base batch_output-L1_rep259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep25-multiFAST5 --filename_base batch_output-L1_rep25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep260-multiFAST5 --filename_base batch_output-L1_rep260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep261-multiFAST5 --filename_base batch_output-L1_rep261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep262-multiFAST5 --filename_base batch_output-L1_rep262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep263-multiFAST5 --filename_base batch_output-L1_rep263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep264-multiFAST5 --filename_base batch_output-L1_rep264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep265-multiFAST5 --filename_base batch_output-L1_rep265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep266-multiFAST5 --filename_base batch_output-L1_rep266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep267-multiFAST5 --filename_base batch_output-L1_rep267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep268-multiFAST5 --filename_base batch_output-L1_rep268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep269-multiFAST5 --filename_base batch_output-L1_rep269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep26-multiFAST5 --filename_base batch_output-L1_rep26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep270-multiFAST5 --filename_base batch_output-L1_rep270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep271-multiFAST5 --filename_base batch_output-L1_rep271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep272-multiFAST5 --filename_base batch_output-L1_rep272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep273-multiFAST5 --filename_base batch_output-L1_rep273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep274-multiFAST5 --filename_base batch_output-L1_rep274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep275-multiFAST5 --filename_base batch_output-L1_rep275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep276-multiFAST5 --filename_base batch_output-L1_rep276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep277-multiFAST5 --filename_base batch_output-L1_rep277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep278-multiFAST5 --filename_base batch_output-L1_rep278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep279-multiFAST5 --filename_base batch_output-L1_rep279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep27-multiFAST5 --filename_base batch_output-L1_rep27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep280-multiFAST5 --filename_base batch_output-L1_rep280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep281-multiFAST5 --filename_base batch_output-L1_rep281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep282-multiFAST5 --filename_base batch_output-L1_rep282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep283-multiFAST5 --filename_base batch_output-L1_rep283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep284-multiFAST5 --filename_base batch_output-L1_rep284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep285-multiFAST5 --filename_base batch_output-L1_rep285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep286-multiFAST5 --filename_base batch_output-L1_rep286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep287-multiFAST5 --filename_base batch_output-L1_rep287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep288-multiFAST5 --filename_base batch_output-L1_rep288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep289-multiFAST5 --filename_base batch_output-L1_rep289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep28-multiFAST5 --filename_base batch_output-L1_rep28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep290-multiFAST5 --filename_base batch_output-L1_rep290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L1_rep2/L1_rep29-multiFAST5 --filename_base batch_output-L1_rep29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep10-multiFAST5 --filename_base batch_output-L2_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep110-multiFAST5 --filename_base batch_output-L2_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep111-multiFAST5 --filename_base batch_output-L2_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep112-multiFAST5 --filename_base batch_output-L2_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep113-multiFAST5 --filename_base batch_output-L2_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep114-multiFAST5 --filename_base batch_output-L2_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep115-multiFAST5 --filename_base batch_output-L2_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep116-multiFAST5 --filename_base batch_output-L2_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep117-multiFAST5 --filename_base batch_output-L2_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep11-multiFAST5 --filename_base batch_output-L2_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep12-multiFAST5 --filename_base batch_output-L2_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep13-multiFAST5 --filename_base batch_output-L2_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep14-multiFAST5 --filename_base batch_output-L2_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep15-multiFAST5 --filename_base batch_output-L2_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep16-multiFAST5 --filename_base batch_output-L2_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep17-multiFAST5 --filename_base batch_output-L2_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep18-multiFAST5 --filename_base batch_output-L2_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep1/L2_rep19-multiFAST5 --filename_base batch_output-L2_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep20-multiFAST5 --filename_base batch_output-L2_rep20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2100-multiFAST5 --filename_base batch_output-L2_rep2100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2101-multiFAST5 --filename_base batch_output-L2_rep2101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2102-multiFAST5 --filename_base batch_output-L2_rep2102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2103-multiFAST5 --filename_base batch_output-L2_rep2103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2104-multiFAST5 --filename_base batch_output-L2_rep2104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2105-multiFAST5 --filename_base batch_output-L2_rep2105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2106-multiFAST5 --filename_base batch_output-L2_rep2106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2107-multiFAST5 --filename_base batch_output-L2_rep2107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep2108-multiFAST5 --filename_base batch_output-L2_rep2108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep210-multiFAST5 --filename_base batch_output-L2_rep210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep211-multiFAST5 --filename_base batch_output-L2_rep211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep212-multiFAST5 --filename_base batch_output-L2_rep212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep213-multiFAST5 --filename_base batch_output-L2_rep213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep214-multiFAST5 --filename_base batch_output-L2_rep214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep215-multiFAST5 --filename_base batch_output-L2_rep215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep216-multiFAST5 --filename_base batch_output-L2_rep216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep217-multiFAST5 --filename_base batch_output-L2_rep217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep218-multiFAST5 --filename_base batch_output-L2_rep218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep219-multiFAST5 --filename_base batch_output-L2_rep219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep21-multiFAST5 --filename_base batch_output-L2_rep21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep220-multiFAST5 --filename_base batch_output-L2_rep220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep221-multiFAST5 --filename_base batch_output-L2_rep221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep222-multiFAST5 --filename_base batch_output-L2_rep222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep223-multiFAST5 --filename_base batch_output-L2_rep223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep224-multiFAST5 --filename_base batch_output-L2_rep224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep225-multiFAST5 --filename_base batch_output-L2_rep225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep226-multiFAST5 --filename_base batch_output-L2_rep226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep227-multiFAST5 --filename_base batch_output-L2_rep227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep228-multiFAST5 --filename_base batch_output-L2_rep228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep229-multiFAST5 --filename_base batch_output-L2_rep229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep22-multiFAST5 --filename_base batch_output-L2_rep22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep230-multiFAST5 --filename_base batch_output-L2_rep230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep231-multiFAST5 --filename_base batch_output-L2_rep231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep232-multiFAST5 --filename_base batch_output-L2_rep232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep233-multiFAST5 --filename_base batch_output-L2_rep233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep234-multiFAST5 --filename_base batch_output-L2_rep234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep235-multiFAST5 --filename_base batch_output-L2_rep235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep236-multiFAST5 --filename_base batch_output-L2_rep236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep237-multiFAST5 --filename_base batch_output-L2_rep237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep238-multiFAST5 --filename_base batch_output-L2_rep238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep239-multiFAST5 --filename_base batch_output-L2_rep239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep23-multiFAST5 --filename_base batch_output-L2_rep23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep240-multiFAST5 --filename_base batch_output-L2_rep240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep241-multiFAST5 --filename_base batch_output-L2_rep241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep242-multiFAST5 --filename_base batch_output-L2_rep242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep243-multiFAST5 --filename_base batch_output-L2_rep243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep244-multiFAST5 --filename_base batch_output-L2_rep244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep245-multiFAST5 --filename_base batch_output-L2_rep245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep246-multiFAST5 --filename_base batch_output-L2_rep246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep247-multiFAST5 --filename_base batch_output-L2_rep247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep248-multiFAST5 --filename_base batch_output-L2_rep248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep249-multiFAST5 --filename_base batch_output-L2_rep249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep24-multiFAST5 --filename_base batch_output-L2_rep24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep250-multiFAST5 --filename_base batch_output-L2_rep250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep251-multiFAST5 --filename_base batch_output-L2_rep251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep252-multiFAST5 --filename_base batch_output-L2_rep252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep253-multiFAST5 --filename_base batch_output-L2_rep253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep254-multiFAST5 --filename_base batch_output-L2_rep254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep255-multiFAST5 --filename_base batch_output-L2_rep255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep256-multiFAST5 --filename_base batch_output-L2_rep256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep257-multiFAST5 --filename_base batch_output-L2_rep257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep258-multiFAST5 --filename_base batch_output-L2_rep258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep259-multiFAST5 --filename_base batch_output-L2_rep259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep25-multiFAST5 --filename_base batch_output-L2_rep25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep260-multiFAST5 --filename_base batch_output-L2_rep260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep261-multiFAST5 --filename_base batch_output-L2_rep261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep262-multiFAST5 --filename_base batch_output-L2_rep262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep263-multiFAST5 --filename_base batch_output-L2_rep263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep264-multiFAST5 --filename_base batch_output-L2_rep264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep265-multiFAST5 --filename_base batch_output-L2_rep265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep266-multiFAST5 --filename_base batch_output-L2_rep266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep267-multiFAST5 --filename_base batch_output-L2_rep267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep268-multiFAST5 --filename_base batch_output-L2_rep268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep269-multiFAST5 --filename_base batch_output-L2_rep269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep26-multiFAST5 --filename_base batch_output-L2_rep26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep270-multiFAST5 --filename_base batch_output-L2_rep270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep271-multiFAST5 --filename_base batch_output-L2_rep271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep272-multiFAST5 --filename_base batch_output-L2_rep272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep273-multiFAST5 --filename_base batch_output-L2_rep273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep274-multiFAST5 --filename_base batch_output-L2_rep274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep275-multiFAST5 --filename_base batch_output-L2_rep275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep276-multiFAST5 --filename_base batch_output-L2_rep276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep277-multiFAST5 --filename_base batch_output-L2_rep277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep278-multiFAST5 --filename_base batch_output-L2_rep278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep279-multiFAST5 --filename_base batch_output-L2_rep279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep27-multiFAST5 --filename_base batch_output-L2_rep27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep280-multiFAST5 --filename_base batch_output-L2_rep280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep281-multiFAST5 --filename_base batch_output-L2_rep281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep282-multiFAST5 --filename_base batch_output-L2_rep282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep283-multiFAST5 --filename_base batch_output-L2_rep283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep284-multiFAST5 --filename_base batch_output-L2_rep284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep285-multiFAST5 --filename_base batch_output-L2_rep285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep286-multiFAST5 --filename_base batch_output-L2_rep286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep287-multiFAST5 --filename_base batch_output-L2_rep287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep288-multiFAST5 --filename_base batch_output-L2_rep288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep289-multiFAST5 --filename_base batch_output-L2_rep289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep28-multiFAST5 --filename_base batch_output-L2_rep28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep290-multiFAST5 --filename_base batch_output-L2_rep290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep291-multiFAST5 --filename_base batch_output-L2_rep291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep292-multiFAST5 --filename_base batch_output-L2_rep292 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep293-multiFAST5 --filename_base batch_output-L2_rep293 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep294-multiFAST5 --filename_base batch_output-L2_rep294 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep295-multiFAST5 --filename_base batch_output-L2_rep295 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep296-multiFAST5 --filename_base batch_output-L2_rep296 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep297-multiFAST5 --filename_base batch_output-L2_rep297 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep298 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep298-multiFAST5 --filename_base batch_output-L2_rep298 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep299 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep299-multiFAST5 --filename_base batch_output-L2_rep299 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L2_rep2/L2_rep29-multiFAST5 --filename_base batch_output-L2_rep29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep10-multiFAST5 --filename_base batch_output-L3_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep110-multiFAST5 --filename_base batch_output-L3_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep111-multiFAST5 --filename_base batch_output-L3_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep112-multiFAST5 --filename_base batch_output-L3_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep113-multiFAST5 --filename_base batch_output-L3_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep114-multiFAST5 --filename_base batch_output-L3_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep115-multiFAST5 --filename_base batch_output-L3_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep116-multiFAST5 --filename_base batch_output-L3_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep117-multiFAST5 --filename_base batch_output-L3_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep118-multiFAST5 --filename_base batch_output-L3_rep118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep119-multiFAST5 --filename_base batch_output-L3_rep119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep11-multiFAST5 --filename_base batch_output-L3_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep120-multiFAST5 --filename_base batch_output-L3_rep120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep121-multiFAST5 --filename_base batch_output-L3_rep121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep122-multiFAST5 --filename_base batch_output-L3_rep122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep123-multiFAST5 --filename_base batch_output-L3_rep123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep124-multiFAST5 --filename_base batch_output-L3_rep124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep125-multiFAST5 --filename_base batch_output-L3_rep125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep126-multiFAST5 --filename_base batch_output-L3_rep126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep127-multiFAST5 --filename_base batch_output-L3_rep127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep128-multiFAST5 --filename_base batch_output-L3_rep128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep129-multiFAST5 --filename_base batch_output-L3_rep129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep12-multiFAST5 --filename_base batch_output-L3_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep130-multiFAST5 --filename_base batch_output-L3_rep130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep131-multiFAST5 --filename_base batch_output-L3_rep131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep132-multiFAST5 --filename_base batch_output-L3_rep132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep133-multiFAST5 --filename_base batch_output-L3_rep133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep134-multiFAST5 --filename_base batch_output-L3_rep134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep135-multiFAST5 --filename_base batch_output-L3_rep135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep136-multiFAST5 --filename_base batch_output-L3_rep136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep137-multiFAST5 --filename_base batch_output-L3_rep137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep138-multiFAST5 --filename_base batch_output-L3_rep138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep139-multiFAST5 --filename_base batch_output-L3_rep139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep13-multiFAST5 --filename_base batch_output-L3_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep140-multiFAST5 --filename_base batch_output-L3_rep140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep14-multiFAST5 --filename_base batch_output-L3_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep15-multiFAST5 --filename_base batch_output-L3_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep16-multiFAST5 --filename_base batch_output-L3_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep17-multiFAST5 --filename_base batch_output-L3_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep18-multiFAST5 --filename_base batch_output-L3_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep1/L3_rep19-multiFAST5 --filename_base batch_output-L3_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep20-multiFAST5 --filename_base batch_output-L3_rep20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep210-multiFAST5 --filename_base batch_output-L3_rep210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep211-multiFAST5 --filename_base batch_output-L3_rep211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep212-multiFAST5 --filename_base batch_output-L3_rep212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep213-multiFAST5 --filename_base batch_output-L3_rep213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep214-multiFAST5 --filename_base batch_output-L3_rep214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep215-multiFAST5 --filename_base batch_output-L3_rep215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep216-multiFAST5 --filename_base batch_output-L3_rep216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep217-multiFAST5 --filename_base batch_output-L3_rep217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep218-multiFAST5 --filename_base batch_output-L3_rep218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep219-multiFAST5 --filename_base batch_output-L3_rep219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep21-multiFAST5 --filename_base batch_output-L3_rep21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep220-multiFAST5 --filename_base batch_output-L3_rep220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep221-multiFAST5 --filename_base batch_output-L3_rep221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep222-multiFAST5 --filename_base batch_output-L3_rep222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep223-multiFAST5 --filename_base batch_output-L3_rep223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep224-multiFAST5 --filename_base batch_output-L3_rep224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep225-multiFAST5 --filename_base batch_output-L3_rep225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep226-multiFAST5 --filename_base batch_output-L3_rep226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep227-multiFAST5 --filename_base batch_output-L3_rep227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep228-multiFAST5 --filename_base batch_output-L3_rep228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep229-multiFAST5 --filename_base batch_output-L3_rep229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep22-multiFAST5 --filename_base batch_output-L3_rep22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep230-multiFAST5 --filename_base batch_output-L3_rep230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep231-multiFAST5 --filename_base batch_output-L3_rep231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep232-multiFAST5 --filename_base batch_output-L3_rep232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep233-multiFAST5 --filename_base batch_output-L3_rep233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep234-multiFAST5 --filename_base batch_output-L3_rep234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep235-multiFAST5 --filename_base batch_output-L3_rep235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep236-multiFAST5 --filename_base batch_output-L3_rep236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep237-multiFAST5 --filename_base batch_output-L3_rep237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep238-multiFAST5 --filename_base batch_output-L3_rep238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep239-multiFAST5 --filename_base batch_output-L3_rep239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep23-multiFAST5 --filename_base batch_output-L3_rep23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep240-multiFAST5 --filename_base batch_output-L3_rep240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep241-multiFAST5 --filename_base batch_output-L3_rep241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep242-multiFAST5 --filename_base batch_output-L3_rep242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep243-multiFAST5 --filename_base batch_output-L3_rep243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep244-multiFAST5 --filename_base batch_output-L3_rep244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep245-multiFAST5 --filename_base batch_output-L3_rep245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep246-multiFAST5 --filename_base batch_output-L3_rep246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep247-multiFAST5 --filename_base batch_output-L3_rep247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep248-multiFAST5 --filename_base batch_output-L3_rep248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep249-multiFAST5 --filename_base batch_output-L3_rep249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep24-multiFAST5 --filename_base batch_output-L3_rep24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep250-multiFAST5 --filename_base batch_output-L3_rep250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep251-multiFAST5 --filename_base batch_output-L3_rep251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep252-multiFAST5 --filename_base batch_output-L3_rep252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep253-multiFAST5 --filename_base batch_output-L3_rep253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep254-multiFAST5 --filename_base batch_output-L3_rep254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep255-multiFAST5 --filename_base batch_output-L3_rep255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep256-multiFAST5 --filename_base batch_output-L3_rep256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep257-multiFAST5 --filename_base batch_output-L3_rep257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep258-multiFAST5 --filename_base batch_output-L3_rep258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep259-multiFAST5 --filename_base batch_output-L3_rep259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep25-multiFAST5 --filename_base batch_output-L3_rep25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep260-multiFAST5 --filename_base batch_output-L3_rep260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep261-multiFAST5 --filename_base batch_output-L3_rep261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep262-multiFAST5 --filename_base batch_output-L3_rep262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep263-multiFAST5 --filename_base batch_output-L3_rep263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep264-multiFAST5 --filename_base batch_output-L3_rep264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep265-multiFAST5 --filename_base batch_output-L3_rep265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep266-multiFAST5 --filename_base batch_output-L3_rep266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep267-multiFAST5 --filename_base batch_output-L3_rep267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep268-multiFAST5 --filename_base batch_output-L3_rep268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep269-multiFAST5 --filename_base batch_output-L3_rep269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep26-multiFAST5 --filename_base batch_output-L3_rep26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep270-multiFAST5 --filename_base batch_output-L3_rep270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep271-multiFAST5 --filename_base batch_output-L3_rep271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep272-multiFAST5 --filename_base batch_output-L3_rep272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep273-multiFAST5 --filename_base batch_output-L3_rep273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep274-multiFAST5 --filename_base batch_output-L3_rep274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep275-multiFAST5 --filename_base batch_output-L3_rep275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep276-multiFAST5 --filename_base batch_output-L3_rep276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep277-multiFAST5 --filename_base batch_output-L3_rep277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep278-multiFAST5 --filename_base batch_output-L3_rep278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep279-multiFAST5 --filename_base batch_output-L3_rep279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep27-multiFAST5 --filename_base batch_output-L3_rep27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep280-multiFAST5 --filename_base batch_output-L3_rep280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep281-multiFAST5 --filename_base batch_output-L3_rep281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep282-multiFAST5 --filename_base batch_output-L3_rep282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep283-multiFAST5 --filename_base batch_output-L3_rep283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep284-multiFAST5 --filename_base batch_output-L3_rep284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep285-multiFAST5 --filename_base batch_output-L3_rep285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep286-multiFAST5 --filename_base batch_output-L3_rep286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep287-multiFAST5 --filename_base batch_output-L3_rep287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep288-multiFAST5 --filename_base batch_output-L3_rep288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep289-multiFAST5 --filename_base batch_output-L3_rep289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep28-multiFAST5 --filename_base batch_output-L3_rep28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep290-multiFAST5 --filename_base batch_output-L3_rep290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep291-multiFAST5 --filename_base batch_output-L3_rep291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep292-multiFAST5 --filename_base batch_output-L3_rep292 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep293-multiFAST5 --filename_base batch_output-L3_rep293 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep294-multiFAST5 --filename_base batch_output-L3_rep294 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep295-multiFAST5 --filename_base batch_output-L3_rep295 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep296-multiFAST5 --filename_base batch_output-L3_rep296 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep297-multiFAST5 --filename_base batch_output-L3_rep297 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep298 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep298-multiFAST5 --filename_base batch_output-L3_rep298 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L3_rep2/L3_rep29-multiFAST5 --filename_base batch_output-L3_rep29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep10-multiFAST5 --filename_base batch_output-L4_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep110-multiFAST5 --filename_base batch_output-L4_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep111-multiFAST5 --filename_base batch_output-L4_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep112-multiFAST5 --filename_base batch_output-L4_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep113-multiFAST5 --filename_base batch_output-L4_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep114-multiFAST5 --filename_base batch_output-L4_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep115-multiFAST5 --filename_base batch_output-L4_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep116-multiFAST5 --filename_base batch_output-L4_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep117-multiFAST5 --filename_base batch_output-L4_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep118-multiFAST5 --filename_base batch_output-L4_rep118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep119-multiFAST5 --filename_base batch_output-L4_rep119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep11-multiFAST5 --filename_base batch_output-L4_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep120-multiFAST5 --filename_base batch_output-L4_rep120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep121-multiFAST5 --filename_base batch_output-L4_rep121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep122-multiFAST5 --filename_base batch_output-L4_rep122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep123-multiFAST5 --filename_base batch_output-L4_rep123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep124-multiFAST5 --filename_base batch_output-L4_rep124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep125-multiFAST5 --filename_base batch_output-L4_rep125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep126-multiFAST5 --filename_base batch_output-L4_rep126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep127-multiFAST5 --filename_base batch_output-L4_rep127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep128-multiFAST5 --filename_base batch_output-L4_rep128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep129-multiFAST5 --filename_base batch_output-L4_rep129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep12-multiFAST5 --filename_base batch_output-L4_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep130-multiFAST5 --filename_base batch_output-L4_rep130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep131-multiFAST5 --filename_base batch_output-L4_rep131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep132-multiFAST5 --filename_base batch_output-L4_rep132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep133-multiFAST5 --filename_base batch_output-L4_rep133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep134-multiFAST5 --filename_base batch_output-L4_rep134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep135-multiFAST5 --filename_base batch_output-L4_rep135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep136-multiFAST5 --filename_base batch_output-L4_rep136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep137-multiFAST5 --filename_base batch_output-L4_rep137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep138-multiFAST5 --filename_base batch_output-L4_rep138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep139-multiFAST5 --filename_base batch_output-L4_rep139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep13-multiFAST5 --filename_base batch_output-L4_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep140-multiFAST5 --filename_base batch_output-L4_rep140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep141-multiFAST5 --filename_base batch_output-L4_rep141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep142-multiFAST5 --filename_base batch_output-L4_rep142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep143-multiFAST5 --filename_base batch_output-L4_rep143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep144-multiFAST5 --filename_base batch_output-L4_rep144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep145-multiFAST5 --filename_base batch_output-L4_rep145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep146-multiFAST5 --filename_base batch_output-L4_rep146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep147-multiFAST5 --filename_base batch_output-L4_rep147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep148-multiFAST5 --filename_base batch_output-L4_rep148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep149-multiFAST5 --filename_base batch_output-L4_rep149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep14-multiFAST5 --filename_base batch_output-L4_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep150-multiFAST5 --filename_base batch_output-L4_rep150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep151-multiFAST5 --filename_base batch_output-L4_rep151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep15-multiFAST5 --filename_base batch_output-L4_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep16-multiFAST5 --filename_base batch_output-L4_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep17-multiFAST5 --filename_base batch_output-L4_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep18-multiFAST5 --filename_base batch_output-L4_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep1/L4_rep19-multiFAST5 --filename_base batch_output-L4_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep10-multiFAST5 --filename_base batch_output-male_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep110-multiFAST5 --filename_base batch_output-male_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep111-multiFAST5 --filename_base batch_output-male_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep112-multiFAST5 --filename_base batch_output-male_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep113-multiFAST5 --filename_base batch_output-male_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep114-multiFAST5 --filename_base batch_output-male_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep115-multiFAST5 --filename_base batch_output-male_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep116-multiFAST5 --filename_base batch_output-male_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep117-multiFAST5 --filename_base batch_output-male_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep118-multiFAST5 --filename_base batch_output-male_rep118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep119-multiFAST5 --filename_base batch_output-male_rep119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep11-multiFAST5 --filename_base batch_output-male_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep120-multiFAST5 --filename_base batch_output-male_rep120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep121-multiFAST5 --filename_base batch_output-male_rep121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep122-multiFAST5 --filename_base batch_output-male_rep122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep123-multiFAST5 --filename_base batch_output-male_rep123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep124-multiFAST5 --filename_base batch_output-male_rep124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep125-multiFAST5 --filename_base batch_output-male_rep125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep126-multiFAST5 --filename_base batch_output-male_rep126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep127-multiFAST5 --filename_base batch_output-male_rep127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep128-multiFAST5 --filename_base batch_output-male_rep128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep129-multiFAST5 --filename_base batch_output-male_rep129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep12-multiFAST5 --filename_base batch_output-male_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep130-multiFAST5 --filename_base batch_output-male_rep130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep131-multiFAST5 --filename_base batch_output-male_rep131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep132-multiFAST5 --filename_base batch_output-male_rep132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep133-multiFAST5 --filename_base batch_output-male_rep133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep134-multiFAST5 --filename_base batch_output-male_rep134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep135-multiFAST5 --filename_base batch_output-male_rep135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep136-multiFAST5 --filename_base batch_output-male_rep136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep137-multiFAST5 --filename_base batch_output-male_rep137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep138-multiFAST5 --filename_base batch_output-male_rep138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep139-multiFAST5 --filename_base batch_output-male_rep139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep13-multiFAST5 --filename_base batch_output-male_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep140-multiFAST5 --filename_base batch_output-male_rep140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep141-multiFAST5 --filename_base batch_output-male_rep141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep142-multiFAST5 --filename_base batch_output-male_rep142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep143-multiFAST5 --filename_base batch_output-male_rep143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep144-multiFAST5 --filename_base batch_output-male_rep144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep145-multiFAST5 --filename_base batch_output-male_rep145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep146-multiFAST5 --filename_base batch_output-male_rep146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep147-multiFAST5 --filename_base batch_output-male_rep147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep148-multiFAST5 --filename_base batch_output-male_rep148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep149-multiFAST5 --filename_base batch_output-male_rep149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep14-multiFAST5 --filename_base batch_output-male_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep150-multiFAST5 --filename_base batch_output-male_rep150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep151-multiFAST5 --filename_base batch_output-male_rep151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep152-multiFAST5 --filename_base batch_output-male_rep152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep153-multiFAST5 --filename_base batch_output-male_rep153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep154-multiFAST5 --filename_base batch_output-male_rep154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep155-multiFAST5 --filename_base batch_output-male_rep155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep156-multiFAST5 --filename_base batch_output-male_rep156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep157-multiFAST5 --filename_base batch_output-male_rep157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep158-multiFAST5 --filename_base batch_output-male_rep158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep159-multiFAST5 --filename_base batch_output-male_rep159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep15-multiFAST5 --filename_base batch_output-male_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep160-multiFAST5 --filename_base batch_output-male_rep160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep161-multiFAST5 --filename_base batch_output-male_rep161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep162-multiFAST5 --filename_base batch_output-male_rep162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep163-multiFAST5 --filename_base batch_output-male_rep163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep164-multiFAST5 --filename_base batch_output-male_rep164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep165-multiFAST5 --filename_base batch_output-male_rep165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep166-multiFAST5 --filename_base batch_output-male_rep166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep167-multiFAST5 --filename_base batch_output-male_rep167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep168-multiFAST5 --filename_base batch_output-male_rep168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep169-multiFAST5 --filename_base batch_output-male_rep169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep16-multiFAST5 --filename_base batch_output-male_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep170-multiFAST5 --filename_base batch_output-male_rep170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep17-multiFAST5 --filename_base batch_output-male_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep18-multiFAST5 --filename_base batch_output-male_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep1/male_rep19-multiFAST5 --filename_base batch_output-male_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep10-multiFAST5 --filename_base young_adult_rep10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1100-multiFAST5 --filename_base young_adult_rep1100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1101-multiFAST5 --filename_base young_adult_rep1101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1102-multiFAST5 --filename_base young_adult_rep1102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1103-multiFAST5 --filename_base young_adult_rep1103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1104-multiFAST5 --filename_base young_adult_rep1104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1105-multiFAST5 --filename_base young_adult_rep1105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1106-multiFAST5 --filename_base young_adult_rep1106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1107-multiFAST5 --filename_base young_adult_rep1107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1108-multiFAST5 --filename_base young_adult_rep1108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1109-multiFAST5 --filename_base young_adult_rep1109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep110-multiFAST5 --filename_base young_adult_rep110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1110-multiFAST5 --filename_base young_adult_rep1110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1111-multiFAST5 --filename_base young_adult_rep1111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1112-multiFAST5 --filename_base young_adult_rep1112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1113-multiFAST5 --filename_base young_adult_rep1113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1114-multiFAST5 --filename_base young_adult_rep1114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1115-multiFAST5 --filename_base young_adult_rep1115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1116-multiFAST5 --filename_base young_adult_rep1116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1117-multiFAST5 --filename_base young_adult_rep1117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1118-multiFAST5 --filename_base young_adult_rep1118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1119-multiFAST5 --filename_base young_adult_rep1119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep111-multiFAST5 --filename_base young_adult_rep111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1120-multiFAST5 --filename_base young_adult_rep1120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1121-multiFAST5 --filename_base young_adult_rep1121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1122-multiFAST5 --filename_base young_adult_rep1122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1123-multiFAST5 --filename_base young_adult_rep1123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1124-multiFAST5 --filename_base young_adult_rep1124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep1125-multiFAST5 --filename_base young_adult_rep1125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep112-multiFAST5 --filename_base young_adult_rep112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep113-multiFAST5 --filename_base young_adult_rep113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep114-multiFAST5 --filename_base young_adult_rep114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep115-multiFAST5 --filename_base young_adult_rep115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep116-multiFAST5 --filename_base young_adult_rep116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep117-multiFAST5 --filename_base young_adult_rep117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep118-multiFAST5 --filename_base young_adult_rep118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep119-multiFAST5 --filename_base young_adult_rep119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep11-multiFAST5 --filename_base young_adult_rep11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep120-multiFAST5 --filename_base young_adult_rep120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep121-multiFAST5 --filename_base young_adult_rep121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep122-multiFAST5 --filename_base young_adult_rep122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep123-multiFAST5 --filename_base young_adult_rep123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep124-multiFAST5 --filename_base young_adult_rep124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep125-multiFAST5 --filename_base young_adult_rep125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep126-multiFAST5 --filename_base young_adult_rep126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep127-multiFAST5 --filename_base young_adult_rep127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep128-multiFAST5 --filename_base young_adult_rep128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep129-multiFAST5 --filename_base young_adult_rep129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep12-multiFAST5 --filename_base young_adult_rep12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep130-multiFAST5 --filename_base young_adult_rep130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep131-multiFAST5 --filename_base young_adult_rep131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep132-multiFAST5 --filename_base young_adult_rep132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep133-multiFAST5 --filename_base young_adult_rep133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep134-multiFAST5 --filename_base young_adult_rep134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep135-multiFAST5 --filename_base young_adult_rep135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep136-multiFAST5 --filename_base young_adult_rep136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep137-multiFAST5 --filename_base young_adult_rep137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep138-multiFAST5 --filename_base young_adult_rep138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep139-multiFAST5 --filename_base young_adult_rep139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep13-multiFAST5 --filename_base young_adult_rep13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep140-multiFAST5 --filename_base young_adult_rep140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep141-multiFAST5 --filename_base young_adult_rep141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep142-multiFAST5 --filename_base young_adult_rep142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep143-multiFAST5 --filename_base young_adult_rep143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep144-multiFAST5 --filename_base young_adult_rep144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep145-multiFAST5 --filename_base young_adult_rep145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep146-multiFAST5 --filename_base young_adult_rep146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep147-multiFAST5 --filename_base young_adult_rep147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep148-multiFAST5 --filename_base young_adult_rep148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep149-multiFAST5 --filename_base young_adult_rep149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep14-multiFAST5 --filename_base young_adult_rep14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep150-multiFAST5 --filename_base young_adult_rep150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep151-multiFAST5 --filename_base young_adult_rep151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep152-multiFAST5 --filename_base young_adult_rep152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep153-multiFAST5 --filename_base young_adult_rep153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep154-multiFAST5 --filename_base young_adult_rep154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep155-multiFAST5 --filename_base young_adult_rep155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep156-multiFAST5 --filename_base young_adult_rep156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep157-multiFAST5 --filename_base young_adult_rep157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep158-multiFAST5 --filename_base young_adult_rep158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep159-multiFAST5 --filename_base young_adult_rep159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep15-multiFAST5 --filename_base young_adult_rep15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep160-multiFAST5 --filename_base young_adult_rep160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep161-multiFAST5 --filename_base young_adult_rep161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep162-multiFAST5 --filename_base young_adult_rep162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep163-multiFAST5 --filename_base young_adult_rep163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep164-multiFAST5 --filename_base young_adult_rep164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep165-multiFAST5 --filename_base young_adult_rep165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep166-multiFAST5 --filename_base young_adult_rep166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep167-multiFAST5 --filename_base young_adult_rep167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep168-multiFAST5 --filename_base young_adult_rep168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep169-multiFAST5 --filename_base young_adult_rep169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep16-multiFAST5 --filename_base young_adult_rep16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep170-multiFAST5 --filename_base young_adult_rep170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep171-multiFAST5 --filename_base young_adult_rep171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep172-multiFAST5 --filename_base young_adult_rep172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep173-multiFAST5 --filename_base young_adult_rep173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep174-multiFAST5 --filename_base young_adult_rep174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep175-multiFAST5 --filename_base young_adult_rep175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep176-multiFAST5 --filename_base young_adult_rep176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep177-multiFAST5 --filename_base young_adult_rep177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep178-multiFAST5 --filename_base young_adult_rep178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep179-multiFAST5 --filename_base young_adult_rep179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep17-multiFAST5 --filename_base young_adult_rep17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep180-multiFAST5 --filename_base young_adult_rep180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep181-multiFAST5 --filename_base young_adult_rep181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep182-multiFAST5 --filename_base young_adult_rep182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep183-multiFAST5 --filename_base young_adult_rep183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep184-multiFAST5 --filename_base young_adult_rep184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep185-multiFAST5 --filename_base young_adult_rep185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep186-multiFAST5 --filename_base young_adult_rep186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep187-multiFAST5 --filename_base young_adult_rep187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep188-multiFAST5 --filename_base young_adult_rep188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep189-multiFAST5 --filename_base young_adult_rep189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep18-multiFAST5 --filename_base young_adult_rep18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep190-multiFAST5 --filename_base young_adult_rep190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep191-multiFAST5 --filename_base young_adult_rep191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep192-multiFAST5 --filename_base young_adult_rep192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep193-multiFAST5 --filename_base young_adult_rep193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep194-multiFAST5 --filename_base young_adult_rep194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep195-multiFAST5 --filename_base young_adult_rep195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep196-multiFAST5 --filename_base young_adult_rep196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep197-multiFAST5 --filename_base young_adult_rep197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep198-multiFAST5 --filename_base young_adult_rep198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep199-multiFAST5 --filename_base young_adult_rep199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep1/young_adult_rep19-multiFAST5 --filename_base young_adult_rep19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep20-multiFAST5 --filename_base batch_output-young_adult_rep20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep210-multiFAST5 --filename_base batch_output-young_adult_rep210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep21-multiFAST5 --filename_base batch_output-young_adult_rep21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep22-multiFAST5 --filename_base batch_output-young_adult_rep22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep23-multiFAST5 --filename_base batch_output-young_adult_rep23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep24-multiFAST5 --filename_base batch_output-young_adult_rep24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep25-multiFAST5 --filename_base batch_output-young_adult_rep25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep26-multiFAST5 --filename_base batch_output-young_adult_rep26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep27-multiFAST5 --filename_base batch_output-young_adult_rep27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep28-multiFAST5 --filename_base batch_output-young_adult_rep28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/young_adult_rep2/young_adult_rep29-multiFAST5 --filename_base batch_output-young_adult_rep29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---0-multiFAST5 --filename_base batch_output-L4_rep2---0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---1-multiFAST5 --filename_base batch_output-L4_rep2---1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---10-multiFAST5 --filename_base batch_output-L4_rep2---10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---11-multiFAST5 --filename_base batch_output-L4_rep2---11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---12-multiFAST5 --filename_base batch_output-L4_rep2---12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---13-multiFAST5 --filename_base batch_output-L4_rep2---13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---14-multiFAST5 --filename_base batch_output-L4_rep2---14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---15-multiFAST5 --filename_base batch_output-L4_rep2---15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---16-multiFAST5 --filename_base batch_output-L4_rep2---16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---17-multiFAST5 --filename_base batch_output-L4_rep2---17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---18-multiFAST5 --filename_base batch_output-L4_rep2---18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---19-multiFAST5 --filename_base batch_output-L4_rep2---19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---2-multiFAST5 --filename_base batch_output-L4_rep2---2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---20-multiFAST5 --filename_base batch_output-L4_rep2---20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---21-multiFAST5 --filename_base batch_output-L4_rep2---21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---22-multiFAST5 --filename_base batch_output-L4_rep2---22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---23-multiFAST5 --filename_base batch_output-L4_rep2---23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---24-multiFAST5 --filename_base batch_output-L4_rep2---24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---25-multiFAST5 --filename_base batch_output-L4_rep2---25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---26-multiFAST5 --filename_base batch_output-L4_rep2---26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---27-multiFAST5 --filename_base batch_output-L4_rep2---27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---28-multiFAST5 --filename_base batch_output-L4_rep2---28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---29-multiFAST5 --filename_base batch_output-L4_rep2---29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---3-multiFAST5 --filename_base batch_output-L4_rep2---3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---30-multiFAST5 --filename_base batch_output-L4_rep2---30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---31-multiFAST5 --filename_base batch_output-L4_rep2---31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---32-multiFAST5 --filename_base batch_output-L4_rep2---32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---33-multiFAST5 --filename_base batch_output-L4_rep2---33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---4-multiFAST5 --filename_base batch_output-L4_rep2---4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---5-multiFAST5 --filename_base batch_output-L4_rep2---5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---6-multiFAST5 --filename_base batch_output-L4_rep2---6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---7-multiFAST5 --filename_base batch_output-L4_rep2---7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---8-multiFAST5 --filename_base batch_output-L4_rep2---8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/L4_rep2/L4_rep2---9-multiFAST5 --filename_base batch_output-L4_rep2---9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---0-multiFAST5 --filename_base batch_output-male_rep2---0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---1-multiFAST5 --filename_base batch_output-male_rep2---1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---10-multiFAST5 --filename_base batch_output-male_rep2---10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---11-multiFAST5 --filename_base batch_output-male_rep2---11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---12-multiFAST5 --filename_base batch_output-male_rep2---12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---13-multiFAST5 --filename_base batch_output-male_rep2---13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---14-multiFAST5 --filename_base batch_output-male_rep2---14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---15-multiFAST5 --filename_base batch_output-male_rep2---15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---16-multiFAST5 --filename_base batch_output-male_rep2---16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---17-multiFAST5 --filename_base batch_output-male_rep2---17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---18-multiFAST5 --filename_base batch_output-male_rep2---18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---19-multiFAST5 --filename_base batch_output-male_rep2---19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---2-multiFAST5 --filename_base batch_output-male_rep2---2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---20-multiFAST5 --filename_base batch_output-male_rep2---20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---21-multiFAST5 --filename_base batch_output-male_rep2---21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---22-multiFAST5 --filename_base batch_output-male_rep2---22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---23-multiFAST5 --filename_base batch_output-male_rep2---23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---24-multiFAST5 --filename_base batch_output-male_rep2---24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---25-multiFAST5 --filename_base batch_output-male_rep2---25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---26-multiFAST5 --filename_base batch_output-male_rep2---26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---27-multiFAST5 --filename_base batch_output-male_rep2---27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---28-multiFAST5 --filename_base batch_output-male_rep2---28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---29-multiFAST5 --filename_base batch_output-male_rep2---29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---3-multiFAST5 --filename_base batch_output-male_rep2---3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---30-multiFAST5 --filename_base batch_output-male_rep2---30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---31-multiFAST5 --filename_base batch_output-male_rep2---31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---32-multiFAST5 --filename_base batch_output-male_rep2---32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---33-multiFAST5 --filename_base batch_output-male_rep2---33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---34-multiFAST5 --filename_base batch_output-male_rep2---34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---35-multiFAST5 --filename_base batch_output-male_rep2---35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---36-multiFAST5 --filename_base batch_output-male_rep2---36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---37-multiFAST5 --filename_base batch_output-male_rep2---37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---38-multiFAST5 --filename_base batch_output-male_rep2---38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---39-multiFAST5 --filename_base batch_output-male_rep2---39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---4-multiFAST5 --filename_base batch_output-male_rep2---4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---40-multiFAST5 --filename_base batch_output-male_rep2---40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---41-multiFAST5 --filename_base batch_output-male_rep2---41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---42-multiFAST5 --filename_base batch_output-male_rep2---42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---43-multiFAST5 --filename_base batch_output-male_rep2---43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---44-multiFAST5 --filename_base batch_output-male_rep2---44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---45-multiFAST5 --filename_base batch_output-male_rep2---45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---46-multiFAST5 --filename_base batch_output-male_rep2---46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---47-multiFAST5 --filename_base batch_output-male_rep2---47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---48-multiFAST5 --filename_base batch_output-male_rep2---48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---49-multiFAST5 --filename_base batch_output-male_rep2---49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---5-multiFAST5 --filename_base batch_output-male_rep2---5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---50-multiFAST5 --filename_base batch_output-male_rep2---50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---51-multiFAST5 --filename_base batch_output-male_rep2---51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---52-multiFAST5 --filename_base batch_output-male_rep2---52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---6-multiFAST5 --filename_base batch_output-male_rep2---6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---7-multiFAST5 --filename_base batch_output-male_rep2---7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---8-multiFAST5 --filename_base batch_output-male_rep2---8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/05-C.elegans-PRJEB31791/male_rep2/male_rep2---9-multiFAST5 --filename_base batch_output-male_rep2---9 --batch_size 1000 --recursive &