single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/0 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/1 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/10 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/100 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/101 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/102 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/103 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/104 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/105 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/106 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/107 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/108 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/109 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/11 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/110 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/111 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/112 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/113 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/114 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/115 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/116 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/117 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/118 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/119 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/12 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/120 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/121 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/122 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/123 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/124 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/125 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/126 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/127 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/128 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/129 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/13 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/130 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/131 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/132 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/133 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/134 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/135 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/136 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/137 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/138 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/139 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/14 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/140 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/141 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/142 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/143 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/144 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/145 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/146 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/147 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/148 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/149 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/15 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/150 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/151 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/152 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/153 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/154 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/155 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/156 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/157 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/158 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/159 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/16 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/160 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/161 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/162 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/163 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/164 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/165 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/166 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/167 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/168 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/169 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/17 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/170 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/171 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/172 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/173 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/174 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/175 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/176 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/177 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/178 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/179 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/18 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/180 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/181 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/182 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/183 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/184 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/185 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/186 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/187 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/188 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/189 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/19 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/190 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/191 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/192 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/193 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/194 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/195 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/196 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/197 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/198 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/199 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/2 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/20 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/200 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/201 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/202 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/203 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/204 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/205 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/206 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/207 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/208 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/209 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/21 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/210 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/211 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/212 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/213 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/214 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/215 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/216 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/217 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/218 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/219 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/22 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/220 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/221 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/222 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/223 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/224 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/225 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/226 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/227 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/228 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/229 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/23 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/230 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/231 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/232 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/233 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/234 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/235 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/236 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/237 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/238 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/239 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/24 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/240 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/241 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/242 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/243 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/244 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/245 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/246 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/247 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/248 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/249 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/25 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/250 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/251 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/252 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/253 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/254 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/255 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/256 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/257 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/258 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/259 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/26 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/260 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/261 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/262 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/263 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/264 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/265 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/266 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/267 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/268 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/269 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/27 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/270 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/28 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/29 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/3 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/30 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/31 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/32 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/33 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/34 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/35 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/36 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/37 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/38 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/39 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/4 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/40 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/41 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/42 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/43 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/44 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/45 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/46 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/47 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/48 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/49 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/5 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/50 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/51 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/52 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/53 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/54 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/55 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/56 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/57 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/58 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/59 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/6 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/60 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/61 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/62 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/63 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/64 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/65 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/66 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/67 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/68 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/69 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/7 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/70 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/71 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/72 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/73 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/74 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/75 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/76 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/77 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/78 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/79 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/8 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/80 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/81 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/82 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/83 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/84 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/85 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/86 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/87 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/88 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/89 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/9 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/90 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/91 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/92 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/93 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/94 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/95 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/96 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/97 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/98 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_1-multiFAST5/99 --filename_base batch_output-20180201_1624_20180201_FAH45730_WT_Col0_2916_regular_seq-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/0 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/1 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/10 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/100 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/101 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/102 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/103 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/104 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/105 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/106 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/107 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/108 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/109 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/11 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/110 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/111 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/112 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/113 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/114 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/115 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/116 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/117 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/118 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/119 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/12 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/120 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/121 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/122 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/123 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/124 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/125 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/126 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/127 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/128 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/129 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/13 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/130 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/131 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/132 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/133 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/134 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/135 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/136 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/137 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/138 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/139 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/14 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/140 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/141 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/142 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/143 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/144 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/145 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/146 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/147 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/148 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/149 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/15 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/150 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/151 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/152 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/153 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/154 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/155 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/156 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/157 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/158 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/159 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/16 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/160 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/161 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/162 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/163 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/164 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/165 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/166 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/167 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/168 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/169 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/17 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/170 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/171 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/172 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/173 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/174 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/175 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/176 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/177 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/178 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/179 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/18 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/180 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/181 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/182 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/183 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/184 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/185 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/186 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/187 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/188 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/189 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/19 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/190 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/191 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/192 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/193 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/194 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/195 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/196 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/197 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/198 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/199 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/2 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/20 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/200 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/201 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/202 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/203 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/204 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/205 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/206 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/207 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/208 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/209 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/21 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/210 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/211 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/212 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/213 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/214 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/215 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/216 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/217 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/218 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/22 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/23 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/24 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/25 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/26 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/27 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/28 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/29 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/3 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/30 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/31 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/32 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/33 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/34 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/35 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/36 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/37 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/38 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/39 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/4 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/40 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/41 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/42 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/43 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/44 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/45 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/46 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/47 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/48 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/49 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/5 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/50 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/51 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/52 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/53 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/54 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/55 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/56 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/57 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/58 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/59 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/6 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/60 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/61 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/62 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/63 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/64 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/65 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/66 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/67 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/68 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/69 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/7 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/70 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/71 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/72 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/73 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/74 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/75 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/76 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/77 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/78 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/79 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/8 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/80 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/81 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/82 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/83 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/84 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/85 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/86 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/87 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/88 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/89 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/9 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/90 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/91 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/92 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/93 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/94 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/95 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/96 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/97 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/98 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a/cluster/gjb_lab/cdr/ON_MinION_datastore/20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2a-multiFAST5/99 --filename_base batch_output-20180413_1605_20180413_FAH77434_mRNA_WT_Col0_2917-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/0 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/1 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/10 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/100 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/101 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/102 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/103 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/104 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/105 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/106 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/107 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/108 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/109 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/11 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/110 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/111 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/112 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/113 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/114 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/115 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/116 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/117 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/118 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/119 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/12 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/120 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/121 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/122 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/123 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/124 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/125 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/126 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/127 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/128 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/129 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/13 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/130 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/131 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/132 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/133 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/134 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/135 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/136 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/137 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/138 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/139 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/14 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/140 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/141 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/142 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/143 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/144 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/145 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/146 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/147 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/148 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/149 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/15 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/150 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/151 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/152 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/153 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/154 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/155 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/156 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/157 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/158 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/159 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/16 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/160 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/161 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/162 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/163 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/164 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/165 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/166 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/167 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/168 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/169 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/17 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/170 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/171 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/172 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/173 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/174 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/175 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/176 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/177 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/178 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/179 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/18 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/180 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/181 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/182 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/183 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/184 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/185 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/186 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/187 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/188 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/189 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/19 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/190 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/191 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/192 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/193 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/194 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/195 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/196 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/197 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/198 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/199 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/2 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/20 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/200 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/201 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/202 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/203 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/204 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/205 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/206 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/207 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/208 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/209 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/21 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/210 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/211 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/212 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/213 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/214 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/215 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/216 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/217 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/218 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/219 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/22 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/220 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/221 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/222 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/223 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/224 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/225 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/226 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/227 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/228 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/229 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/23 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/230 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/231 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/232 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/233 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/234 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/235 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/236 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/237 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/238 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/239 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/24 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/240 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/241 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/242 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/243 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/244 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/245 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/246 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/247 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/248 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/249 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/25 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/250 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/251 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/252 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/253 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/254 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/255 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/256 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/257 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/258 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/259 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/26 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/260 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/261 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/262 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/263 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/264 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/265 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/266 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/267 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/268 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/269 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/27 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/270 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/271 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/272 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/273 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/274 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/275 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/276 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/277 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/278 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/279 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/28 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/29 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/3 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/30 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/31 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/32 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/33 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/34 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/35 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/36 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/37 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/38 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/39 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/4 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/40 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/41 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/42 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/43 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/44 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/45 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/46 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/47 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/48 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/49 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/5 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/50 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/51 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/52 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/53 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/54 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/55 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/56 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/57 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/58 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/59 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/6 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/60 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/61 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/62 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/63 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/64 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/65 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/66 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/67 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/68 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/69 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/7 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/70 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/71 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/72 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/73 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/74 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/75 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/76 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/77 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/78 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/79 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/8 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/80 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/81 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/82 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/83 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/84 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/85 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/86 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/87 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/88 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/89 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/9 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/90 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/91 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/92 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/93 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/94 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/95 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/96 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/97 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/98 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180227_1839_20180227_FAH59351_vir1_2922_DRS/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_1-multiFAST5/99 --filename_base batch_output-20180227_1839_20180227_FAH59351_vir1_2922_DRS-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/0 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/1 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/10 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/100 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/101 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/102 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/103 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/104 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/105 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/106 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/107 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/108 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/109 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/11 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/110 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/111 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/112 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/113 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/114 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/115 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/116 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/117 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/118 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/119 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/12 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/120 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/121 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/122 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/123 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/124 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/125 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/126 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/127 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/128 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/129 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/13 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/130 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/131 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/132 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/133 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/134 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/135 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/136 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/137 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/138 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/139 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/14 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/140 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/141 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/142 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/143 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/144 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/145 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/146 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/147 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/148 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/149 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/15 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/150 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/151 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/152 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/153 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/16 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/17 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/18 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/19 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/2 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/20 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/21 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/22 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/23 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/24 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/25 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/26 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/27 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/28 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/29 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/3 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/30 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/31 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/32 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/33 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/34 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/35 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/36 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/37 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/38 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/39 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/4 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/40 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/41 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/42 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/43 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/44 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/45 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/46 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/47 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/48 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/49 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/5 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/50 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/51 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/52 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/53 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/54 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/55 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/56 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/57 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/58 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/59 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/6 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/60 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/61 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/62 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/63 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/64 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/65 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/66 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/67 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/68 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/69 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/7 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/70 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/71 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/72 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/73 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/74 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/75 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/76 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/77 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/78 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/79 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/8 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/80 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/81 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/82 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/83 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/84 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/85 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/86 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/87 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/88 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/89 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/9 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/90 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/91 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/92 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/93 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/94 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/95 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/96 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/97 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/98 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b/cluster/gjb_lab/cdr/ON_MinION_datastore/20180405_1615_20180405_FAH59362_WT_2917/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_2b-multiFAST5/99 --filename_base batch_output-20180405_1615_20180405_FAH59362_WT_2917-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/0 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/1 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/10 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/100 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/101 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/102 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/103 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/104 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/105 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/106 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/107 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/108 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/109 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/11 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/110 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/111 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/112 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/113 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/114 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/115 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/116 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/117 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/118 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/119 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/12 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/120 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/121 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/122 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/123 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/124 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/125 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/126 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/127 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/128 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/129 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/13 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/130 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/131 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/132 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/133 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/134 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/135 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/136 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/137 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/138 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/139 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/14 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/140 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/141 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/142 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/143 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/144 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/145 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/146 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/147 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/148 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/149 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/15 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/150 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/151 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/152 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/153 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/154 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/155 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/156 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/157 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/158 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/159 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/16 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/160 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/161 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/162 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/163 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/164 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/165 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/166 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/167 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/168 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/169 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/17 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/170 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/171 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/172 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/173 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/174 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/175 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/176 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/177 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/18 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/19 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/2 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/20 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/21 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/22 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/23 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/24 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/25 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/26 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/27 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/28 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/29 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/3 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/30 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/31 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/32 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/33 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/34 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/35 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/36 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/37 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/38 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/39 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/4 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/40 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/41 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/42 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/43 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/44 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/45 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/46 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/47 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/48 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/49 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/5 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/50 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/51 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/52 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/53 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/54 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/55 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/56 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/57 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/58 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/59 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/6 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/60 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/61 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/62 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/63 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/64 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/65 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/66 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/67 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/68 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/69 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/7 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/70 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/71 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/72 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/73 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/74 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/75 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/76 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/77 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/78 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/79 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/8 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/80 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/81 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/82 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/83 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/84 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/85 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/86 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/87 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/88 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/89 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/9 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/90 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/91 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/92 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/93 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/94 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/95 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/96 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/97 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/98 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_4-multiFAST5/99 --filename_base batch_output-20180418_1435_20180418_FAH83552_mRNA_WT_Col0_2919-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/0 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/1 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/10 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/100 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/101 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/102 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/103 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/104 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/105 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/106 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/107 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/108 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/109 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/11 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/110 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/111 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/112 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/113 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/114 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/115 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/116 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/117 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/118 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/119 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/12 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/120 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/121 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/122 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/123 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/124 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/125 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/126 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/127 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/128 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/129 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/13 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/130 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/131 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/132 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/133 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/134 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/135 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/136 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/137 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/138 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/139 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/14 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/140 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/141 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/142 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/143 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/144 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/145 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/146 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/147 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/148 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/149 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/15 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/150 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/151 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/152 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/153 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/154 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/155 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/156 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/157 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/158 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/159 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/16 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/160 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/161 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/162 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/163 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/164 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/165 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/166 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/167 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/168 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/169 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/17 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/170 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/171 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/172 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/173 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/174 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/175 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/176 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/18 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/19 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/2 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/20 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/21 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/22 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/23 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/24 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/25 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/26 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/27 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/28 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/29 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/3 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/30 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/31 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/32 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/33 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/34 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/35 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/36 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/37 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/38 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/39 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/4 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/40 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/41 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/42 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/43 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/44 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/45 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/46 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/47 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/48 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/49 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/5 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/50 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/51 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/52 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/53 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/54 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/55 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/56 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/57 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/58 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/59 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/6 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/60 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/61 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/62 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/63 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/64 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/65 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/66 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/67 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/68 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/69 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/7 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/70 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/71 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/72 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/73 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/74 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/75 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/76 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/77 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/78 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/79 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/8 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/80 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/81 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/82 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/83 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/84 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/85 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/86 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/87 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/88 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/89 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/9 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/90 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/91 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/92 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/93 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/94 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/95 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/96 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/97 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/98 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/col0_nanopore_drs_3-multiFAST5/99 --filename_base batch_output-20180416_1541_20180415_FAH83697_mRNA_WT_Col0_2918-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/0 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/1 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/10 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/100 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/101 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/102 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/103 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/104 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/105 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/106 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/107 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/108 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/109 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/11 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/110 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/111 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/112 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/113 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/114 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/115 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/116 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/117 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/118 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/119 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/12 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/120 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/121 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/122 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/123 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/124 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/125 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/126 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/127 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/128 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/129 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/13 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/130 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/131 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/132 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/133 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/134 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/135 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/136 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/137 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/138 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/139 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/14 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/140 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/141 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/142 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/143 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/144 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/145 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/146 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/147 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/148 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/149 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/15 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/150 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/151 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/152 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/153 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/154 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/155 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/156 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/157 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/158 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/159 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/16 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/160 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/161 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/162 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/163 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/164 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/165 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/166 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/167 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/168 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/169 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/17 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/170 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/171 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/172 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/173 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/174 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/175 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/176 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/177 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/178 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/179 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/18 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/180 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/181 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/182 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/183 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/184 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/185 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/186 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/187 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/188 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/189 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/19 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/2 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/20 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/21 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/22 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/23 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/24 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/25 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/26 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/27 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/28 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/29 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/3 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/30 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/31 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/32 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/33 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/34 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/35 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/36 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/37 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/38 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/39 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/4 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/40 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/41 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/42 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/43 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/44 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/45 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/46 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/47 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/48 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/49 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/5 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/50 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/51 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/52 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/53 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/54 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/55 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/56 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/57 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/58 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/59 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/6 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/60 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/61 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/62 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/63 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/64 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/65 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/66 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/67 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/68 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/69 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/7 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/70 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/71 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/72 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/73 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/74 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/75 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/76 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/77 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/78 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/79 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/8 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/80 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/81 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/82 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/83 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/84 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/85 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/86 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/87 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/88 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/89 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/9 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/90 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/91 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/92 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/93 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/94 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/95 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/96 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/97 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/98 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180912_1424_20180912_vir1_2923_mRNA/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_2-multiFAST5/99 --filename_base batch_output-20180912_1424_20180912_vir1_2923_mRNA-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/0 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/1 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/10 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/100 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/101 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/102 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/103 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/104 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/105 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/106 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/107 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/108 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/109 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/11 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/110 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/111 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/112 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/113 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/114 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/115 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/116 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/117 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/118 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/119 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/12 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/120 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/121 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/122 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/123 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/124 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/125 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/126 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/127 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/128 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/129 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/13 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/130 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/131 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/132 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/133 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/134 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/135 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/136 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/137 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/138 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/139 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/14 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/140 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/141 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/142 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/143 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/144 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/145 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/146 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/147 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/148 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/149 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/15 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/150 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/151 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/152 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/153 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/154 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/155 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/156 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/157 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/158 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/159 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/16 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/160 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/161 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/162 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/163 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/164 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/165 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/166 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/167 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/168 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/169 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/17 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/170 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/171 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/172 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/173 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/174 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/175 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/176 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/177 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/178 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/179 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/18 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/180 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/181 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/182 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/183 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/184 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/185 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/186 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/187 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/188 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/189 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/19 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/190 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/191 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/192 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/193 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/194 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/195 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/196 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/197 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/198 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/199 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/2 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/20 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/200 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/201 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/202 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/203 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/204 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/205 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/206 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/207 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/208 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/209 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/21 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/210 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/211 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/212 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/213 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/214 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/215 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/216 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/217 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/218 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/219 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/22 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/220 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/221 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/222 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/223 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/224 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/225 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/226 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/227 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/228 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/229 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/23 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/230 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/231 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/232 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/233 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/234 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/235 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/236 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/237 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/238 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/239 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/24 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/240 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/241 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/242 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/243 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/244 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/245 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/246 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/247 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/248 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/249 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/25 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/250 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/251 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/252 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/253 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/254 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/255 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/256 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/257 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/258 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/259 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/26 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/260 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/261 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/262 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/263 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/264 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/265 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/266 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/267 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/268 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/269 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/27 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/270 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/271 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/272 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/273 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/274 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/275 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/276 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/277 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/278 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/279 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/28 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/280 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/281 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/282 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/283 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/284 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/285 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/286 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/287 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/288 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/289 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/29 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/290 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/291 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/292 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-292 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/293 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-293 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/294 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-294 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/295 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-295 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/296 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-296 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/297 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-297 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/298 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/298 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-298 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/299 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/299 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-299 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/3 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/30 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/300 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/300 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-300 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/301 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/301 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-301 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/302 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/302 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-302 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/303 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/303 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-303 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/304 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/304 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-304 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/305 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/305 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-305 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/306 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/306 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-306 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/307 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/307 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-307 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/308 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/308 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-308 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/309 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/309 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-309 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/31 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/310 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/310 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-310 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/311 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/311 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-311 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/312 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/312 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-312 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/313 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/313 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-313 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/314 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/314 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-314 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/315 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/315 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-315 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/316 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/316 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-316 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/317 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/317 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-317 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/318 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/318 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-318 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/319 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/319 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-319 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/32 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/320 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/320 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-320 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/321 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/321 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-321 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/322 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/322 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-322 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/323 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/323 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-323 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/324 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/324 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-324 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/325 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/325 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-325 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/326 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/326 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-326 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/327 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/327 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-327 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/328 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/328 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-328 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/329 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/329 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-329 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/33 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/330 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/330 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-330 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/331 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/331 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-331 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/332 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/332 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-332 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/333 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/333 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-333 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/334 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/334 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-334 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/335 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/335 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-335 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/336 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/336 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-336 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/337 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/337 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-337 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/338 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/338 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-338 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/339 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/339 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-339 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/34 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/340 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/340 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-340 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/341 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/341 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-341 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/342 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/342 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-342 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/343 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/343 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-343 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/344 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/344 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-344 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/345 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/345 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-345 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/346 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/346 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-346 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/347 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/347 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-347 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/348 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/348 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-348 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/349 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/349 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-349 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/35 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/350 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/350 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-350 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/351 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/351 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-351 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/352 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/352 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-352 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/353 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/353 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-353 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/354 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/354 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-354 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/355 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/355 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-355 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/356 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/356 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-356 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/357 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/357 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-357 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/358 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/358 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-358 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/359 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/359 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-359 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/36 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/360 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/360 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-360 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/361 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/361 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-361 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/362 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/362 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-362 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/363 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/363 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-363 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/364 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/364 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-364 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/365 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/365 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-365 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/366 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/366 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-366 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/367 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/367 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-367 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/368 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/368 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-368 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/369 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/369 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-369 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/37 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/370 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/370 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-370 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/371 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/371 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-371 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/372 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/372 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-372 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/373 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/373 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-373 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/374 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/374 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-374 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/375 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/375 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-375 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/376 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/376 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-376 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/377 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/377 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-377 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/378 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/378 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-378 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/379 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/379 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-379 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/38 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/380 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/380 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-380 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/381 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/381 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-381 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/382 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/382 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-382 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/383 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/383 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-383 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/384 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/384 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-384 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/385 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/385 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-385 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/386 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/386 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-386 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/387 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/387 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-387 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/388 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/388 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-388 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/389 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/389 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-389 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/39 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/390 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/390 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-390 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/391 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/391 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-391 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/392 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/392 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-392 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/393 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/393 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-393 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/394 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/394 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-394 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/395 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/395 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-395 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/396 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/396 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-396 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/397 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/397 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-397 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/398 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/398 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-398 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/399 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/399 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-399 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/4 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/40 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/400 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/400 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-400 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/401 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/401 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-401 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/402 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/402 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-402 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/403 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/403 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-403 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/404 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/404 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-404 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/405 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/405 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-405 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/406 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/406 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-406 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/407 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/407 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-407 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/408 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/408 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-408 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/409 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/409 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-409 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/41 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/410 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/410 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-410 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/411 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/411 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-411 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/42 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/43 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/44 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/45 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/46 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/47 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/48 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/49 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/5 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/50 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/51 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/52 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/53 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/54 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/55 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/56 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/57 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/58 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/59 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/6 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/60 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/61 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/62 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/63 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/64 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/65 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/66 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/67 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/68 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/69 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/7 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/70 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/71 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/72 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/73 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/74 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/75 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/76 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/77 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/78 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/79 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/8 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/80 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/81 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/82 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/83 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/84 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/85 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/86 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/87 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/88 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/89 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/9 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/90 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/91 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/92 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/93 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/94 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/95 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/96 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/97 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/98 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20180928_1515_vir-1_20180929_2924_mRNA/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_3-multiFAST5/99 --filename_base batch_output-20180928_1515_vir-1_20180929_2924_mRNA-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/0 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/1 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/10 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/100 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/101 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/102 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/103 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/104 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/105 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/106 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/107 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/108 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/109 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/11 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/110 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/111 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/112 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/113 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/114 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/115 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/116 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/117 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/118 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/119 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/12 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/120 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/121 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/122 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/123 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/124 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/125 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/126 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/127 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/128 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/129 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/13 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/130 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/131 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/132 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/133 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/134 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/135 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/136 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/137 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/138 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/139 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/14 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/140 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/141 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/142 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/143 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/144 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/145 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/146 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/147 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/148 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/149 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/15 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/150 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/151 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/152 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/153 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/154 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/155 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/156 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/157 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/158 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/159 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/16 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/160 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/161 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/162 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/163 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/164 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/165 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/166 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/167 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/168 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/169 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/17 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/170 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/171 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/172 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/173 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/174 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/175 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/176 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/177 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/178 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/179 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/18 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/180 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/181 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/182 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/183 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/184 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/185 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/186 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/187 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/188 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/189 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/19 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/190 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/191 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/192 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/193 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/194 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/195 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/196 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/197 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/198 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/199 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/2 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/20 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/200 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/201 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/202 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/203 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/204 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/205 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/206 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/207 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/208 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/209 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/21 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/210 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/211 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/212 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/213 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/214 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/215 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/216 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/217 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/218 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/219 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/22 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/220 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/221 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/222 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/223 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/224 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/225 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/226 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/227 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/228 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/229 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/23 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/230 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/231 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/232 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/233 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/234 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/235 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/236 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/237 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/238 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/239 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/24 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/240 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/241 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/242 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/243 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/244 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/245 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/246 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/247 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/248 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/249 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/25 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/250 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/251 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/252 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/253 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/254 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/255 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/256 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/257 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/258 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/259 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/26 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/260 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/261 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/262 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/263 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/264 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/265 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/266 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/267 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/268 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/269 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/27 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/270 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/271 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/272 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/273 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/274 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/275 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/276 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/277 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/278 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/279 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/28 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/280 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/281 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/282 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/283 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/284 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/285 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/286 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/287 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/288 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/289 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/29 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/290 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/291 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/292 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-292 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/293 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-293 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/294 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-294 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/295 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-295 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/296 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-296 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/3 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/30 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/31 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/32 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/33 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/34 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/35 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/36 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/37 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/38 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/39 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/4 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/40 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/41 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/42 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/43 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/44 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/45 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/46 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/47 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/48 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/49 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/5 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/50 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/51 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/52 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/53 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/54 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/55 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/56 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/57 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/58 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/59 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/6 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/60 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/61 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/62 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/63 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/64 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/65 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/66 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/67 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/68 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/69 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/7 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/70 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/71 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/72 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/73 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/74 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/75 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/76 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/77 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/78 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/79 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/8 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/80 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/81 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/82 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/83 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/84 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/85 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/86 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/87 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/88 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/89 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/9 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/90 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/91 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/92 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/93 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/94 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/95 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/96 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/97 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/98 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4/cluster/gjb_lab/cdr/ON_MinION_datastore/20181003_1345_20181003_mRNA_vir_2925/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/vir1_nanopore_drs_4-multiFAST5/99 --filename_base batch_output-20181003_1345_20181003_mRNA_vir_2925-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/0 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/1 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/10 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/100 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/101 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/102 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/103 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/104 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/105 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/106 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/107 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/108 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/109 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/11 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/110 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/111 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/112 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/113 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/114 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/115 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/116 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/117 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/118 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/119 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/12 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/120 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/121 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/122 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/123 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/124 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/125 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/126 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/127 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/128 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/129 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/13 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/130 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/131 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/132 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/133 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/134 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/135 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/136 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/137 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/138 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/139 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/14 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/140 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/141 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/142 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/143 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/144 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/145 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/146 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/147 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/148 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/149 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/15 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/150 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/151 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/152 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/153 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/154 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/155 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/156 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/157 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/158 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/159 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/16 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/160 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/161 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/162 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/163 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/164 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/165 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/166 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/167 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/168 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/169 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/17 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/170 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/171 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/172 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/173 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/174 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/175 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/176 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/177 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/178 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/179 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/18 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/180 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/181 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/182 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/183 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/184 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/185 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/186 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/187 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/188 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/189 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/19 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/190 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/191 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/192 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/193 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/194 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/195 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/196 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/197 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/198 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/199 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/2 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/20 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/200 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/201 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/202 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/203 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/204 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/205 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/206 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/207 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/208 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/209 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/21 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/210 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/211 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/212 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/213 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/214 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/215 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/216 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/217 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/218 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/219 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/22 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/220 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/221 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/222 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/223 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/224 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/225 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/226 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/227 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/228 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/229 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/23 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/230 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/231 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/232 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/233 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/234 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/235 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/236 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/237 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/238 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/239 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/24 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/240 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/241 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/242 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/243 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/244 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/245 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/246 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/247 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/248 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/249 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/25 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/250 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/251 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/252 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/253 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/254 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/255 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/256 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/257 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/258 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/259 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/26 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/260 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/261 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/262 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/263 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/264 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/265 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/266 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/267 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/268 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/269 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/27 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/270 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/271 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/272 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/273 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/274 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/275 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/276 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/277 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/278 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/279 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/28 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/280 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/281 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/282 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/283 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/284 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/285 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/286 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/287 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/288 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/289 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/29 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/290 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/291 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/3 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/30 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/31 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/32 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/33 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/34 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/35 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/36 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/37 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/38 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/39 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/4 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/40 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/41 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/42 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/43 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/44 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/45 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/46 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/47 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/48 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/49 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/5 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/50 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/51 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/52 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/53 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/54 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/55 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/56 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/57 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/58 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/59 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/6 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/60 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/61 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/62 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/63 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/64 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/65 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/66 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/67 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/68 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/69 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/7 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/70 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/71 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/72 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/73 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/74 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/75 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/76 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/77 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/78 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/79 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/8 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/80 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/81 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/82 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/83 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/84 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/85 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/86 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/87 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/88 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/89 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/9 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/90 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/91 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/92 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/93 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/94 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/95 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/96 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/97 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/98 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1/cluster/gjb_lab/cdr/ON_MinION_datastore/20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_1-multiFAST5/99 --filename_base batch_output-20180301_1832_20180301_FAH54216_VIRcomp_2928_DRS-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/0 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/1 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/10 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/100 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/101 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/102 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/103 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/104 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/105 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/106 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/107 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/108 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/109 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/11 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/110 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/111 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/112 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/113 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/114 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/115 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/116 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/117 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/118 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/119 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/12 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/120 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/121 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/122 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/123 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/124 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/125 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/126 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/127 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/128 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/129 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/13 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/130 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/131 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/132 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/133 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/134 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/135 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/136 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/137 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/138 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/139 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/14 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/140 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/141 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/142 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/143 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/144 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/145 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/146 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/147 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/148 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/149 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/15 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/150 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/151 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/152 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/153 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/154 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/155 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/156 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/157 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/158 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/159 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/16 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/160 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/161 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/162 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/163 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/164 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/165 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/166 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/167 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/168 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/169 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/17 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/170 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/171 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/172 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/173 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/174 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/175 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/176 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/177 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/178 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/179 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/18 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/180 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/181 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/182 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/183 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/184 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/185 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/186 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/187 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/188 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/189 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/19 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/190 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/191 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/192 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/193 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/194 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/195 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/196 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/197 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/198 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/199 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/2 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/20 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/200 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/201 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/202 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/203 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/204 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/205 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/206 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/207 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/208 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/209 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/21 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/210 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/211 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/212 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/213 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/214 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/215 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/216 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/217 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/218 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/219 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/22 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/220 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/221 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/222 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/223 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/224 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/225 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/226 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/227 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/228 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/229 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/23 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/230 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/231 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/232 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/233 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/234 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/235 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/236 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/237 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/238 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/239 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/24 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/240 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/241 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/242 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/243 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/244 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/245 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/246 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/247 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/248 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/249 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/25 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/250 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/251 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/252 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/253 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/254 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/255 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/256 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/257 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/258 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/259 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/26 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/260 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/261 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/262 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/263 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/264 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/265 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/266 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/267 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/268 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/269 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/27 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/270 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/271 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/272 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/273 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/274 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/275 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/276 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/277 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/278 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/279 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/28 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/280 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/281 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/282 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/283 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/284 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/285 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/286 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/287 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/288 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/289 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/29 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/290 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/291 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/292 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-292 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/293 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-293 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/294 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-294 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/295 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-295 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/296 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-296 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/297 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-297 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/298 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/298 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-298 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/299 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/299 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-299 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/3 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/30 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/300 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/300 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-300 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/301 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/301 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-301 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/302 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/302 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-302 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/303 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/303 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-303 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/304 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/304 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-304 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/305 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/305 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-305 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/306 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/306 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-306 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/307 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/307 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-307 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/308 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/308 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-308 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/309 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/309 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-309 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/31 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/310 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/310 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-310 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/311 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/311 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-311 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/312 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/312 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-312 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/313 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/313 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-313 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/314 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/314 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-314 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/315 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/315 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-315 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/316 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/316 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-316 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/317 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/317 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-317 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/318 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/318 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-318 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/319 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/319 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-319 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/32 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/320 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/320 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-320 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/321 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/321 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-321 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/322 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/322 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-322 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/323 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/323 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-323 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/324 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/324 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-324 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/325 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/325 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-325 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/326 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/326 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-326 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/327 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/327 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-327 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/328 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/328 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-328 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/329 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/329 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-329 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/33 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/330 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/330 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-330 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/331 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/331 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-331 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/332 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/332 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-332 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/333 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/333 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-333 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/334 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/334 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-334 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/335 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/335 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-335 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/336 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/336 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-336 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/337 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/337 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-337 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/338 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/338 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-338 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/339 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/339 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-339 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/34 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/340 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/340 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-340 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/341 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/341 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-341 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/342 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/342 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-342 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/343 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/343 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-343 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/344 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/344 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-344 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/345 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/345 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-345 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/346 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/346 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-346 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/347 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/347 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-347 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/348 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/348 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-348 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/349 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/349 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-349 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/35 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/350 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/350 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-350 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/351 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/351 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-351 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/352 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/352 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-352 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/36 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/37 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/38 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/39 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/4 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/40 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/41 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/42 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/43 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/44 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/45 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/46 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/47 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/48 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/49 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/5 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/50 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/51 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/52 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/53 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/54 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/55 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/56 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/57 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/58 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/59 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/6 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/60 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/61 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/62 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/63 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/64 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/65 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/66 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/67 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/68 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/69 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/7 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/70 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/71 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/72 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/73 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/74 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/75 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/76 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/77 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/78 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/79 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/8 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/80 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/81 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/82 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/83 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/84 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/85 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/86 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/87 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/88 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/89 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/9 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/90 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/91 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/92 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/93 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/94 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/95 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/96 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/97 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/98 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2/cluster/gjb_lab/cdr/ON_MinION_datastore/20180907_1420_20180907_VIRGFP_2929_mRNA/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_2-multiFAST5/99 --filename_base batch_output-20180907_1420_20180907_VIRGFP_2929_mRNA-multiFAST5-99 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/0 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/0 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-0 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/1 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/1 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-1 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/10 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/10 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-10 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/100 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/100 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-100 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/101 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/101 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-101 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/102 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/102 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-102 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/103 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/103 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-103 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/104 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/104 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-104 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/105 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/105 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-105 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/106 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/106 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-106 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/107 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/107 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-107 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/108 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/108 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-108 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/109 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/109 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-109 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/11 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/11 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-11 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/110 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/110 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-110 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/111 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/111 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-111 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/112 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/112 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-112 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/113 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/113 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-113 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/114 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/114 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-114 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/115 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/115 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-115 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/116 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/116 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-116 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/117 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/117 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-117 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/118 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/118 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-118 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/119 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/119 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-119 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/12 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/12 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-12 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/120 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/120 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-120 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/121 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/121 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-121 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/122 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/122 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-122 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/123 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/123 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-123 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/124 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/124 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-124 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/125 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/125 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-125 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/126 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/126 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-126 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/127 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/127 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-127 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/128 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/128 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-128 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/129 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/129 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-129 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/13 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/13 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-13 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/130 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/130 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-130 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/131 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/131 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-131 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/132 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/132 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-132 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/133 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/133 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-133 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/134 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/134 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-134 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/135 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/135 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-135 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/136 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/136 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-136 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/137 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/137 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-137 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/138 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/138 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-138 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/139 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/139 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-139 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/14 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/14 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-14 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/140 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/140 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-140 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/141 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/141 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-141 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/142 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/142 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-142 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/143 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/143 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-143 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/144 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/144 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-144 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/145 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/145 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-145 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/146 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/146 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-146 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/147 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/147 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-147 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/148 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/148 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-148 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/149 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/149 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-149 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/15 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/15 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-15 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/150 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/150 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-150 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/151 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/151 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-151 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/152 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/152 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-152 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/153 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/153 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-153 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/154 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/154 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-154 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/155 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/155 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-155 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/156 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/156 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-156 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/157 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/157 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-157 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/158 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/158 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-158 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/159 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/159 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-159 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/16 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/16 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-16 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/160 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/160 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-160 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/161 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/161 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-161 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/162 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/162 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-162 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/163 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/163 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-163 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/164 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/164 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-164 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/165 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/165 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-165 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/166 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/166 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-166 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/167 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/167 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-167 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/168 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/168 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-168 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/169 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/169 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-169 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/17 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/17 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-17 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/170 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/170 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-170 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/171 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/171 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-171 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/172 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/172 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-172 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/173 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/173 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-173 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/174 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/174 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-174 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/175 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/175 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-175 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/176 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/176 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-176 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/177 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/177 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-177 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/178 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/178 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-178 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/179 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/179 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-179 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/18 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/18 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-18 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/180 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/180 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-180 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/181 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/181 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-181 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/182 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/182 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-182 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/183 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/183 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-183 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/184 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/184 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-184 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/185 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/185 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-185 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/186 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/186 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-186 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/187 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/187 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-187 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/188 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/188 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-188 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/189 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/189 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-189 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/19 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/19 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-19 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/190 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/190 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-190 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/191 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/191 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-191 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/192 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/192 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-192 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/193 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/193 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-193 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/194 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/194 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-194 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/195 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/195 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-195 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/196 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/196 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-196 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/197 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/197 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-197 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/198 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/198 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-198 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/199 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/199 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-199 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/2 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/2 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-2 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/20 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/20 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-20 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/200 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/200 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-200 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/201 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/201 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-201 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/202 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/202 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-202 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/203 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/203 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-203 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/204 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/204 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-204 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/205 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/205 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-205 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/206 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/206 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-206 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/207 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/207 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-207 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/208 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/208 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-208 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/209 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/209 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-209 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/21 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/21 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-21 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/210 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/210 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-210 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/211 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/211 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-211 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/212 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/212 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-212 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/213 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/213 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-213 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/214 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/214 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-214 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/215 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/215 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-215 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/216 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/216 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-216 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/217 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/217 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-217 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/218 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/218 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-218 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/219 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/219 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-219 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/22 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/22 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-22 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/220 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/220 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-220 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/221 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/221 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-221 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/222 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/222 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-222 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/223 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/223 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-223 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/224 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/224 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-224 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/225 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/225 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-225 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/226 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/226 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-226 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/227 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/227 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-227 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/228 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/228 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-228 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/229 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/229 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-229 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/23 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/23 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-23 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/230 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/230 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-230 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/231 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/231 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-231 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/232 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/232 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-232 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/233 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/233 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-233 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/234 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/234 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-234 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/235 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/235 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-235 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/236 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/236 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-236 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/237 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/237 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-237 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/238 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/238 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-238 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/239 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/239 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-239 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/24 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/24 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-24 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/240 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/240 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-240 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/241 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/241 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-241 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/242 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/242 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-242 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/243 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/243 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-243 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/244 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/244 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-244 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/245 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/245 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-245 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/246 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/246 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-246 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/247 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/247 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-247 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/248 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/248 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-248 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/249 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/249 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-249 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/25 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/25 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-25 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/250 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/250 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-250 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/251 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/251 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-251 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/252 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/252 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-252 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/253 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/253 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-253 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/254 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/254 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-254 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/255 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/255 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-255 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/256 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/256 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-256 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/257 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/257 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-257 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/258 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/258 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-258 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/259 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/259 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-259 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/26 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/26 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-26 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/260 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/260 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-260 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/261 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/261 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-261 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/262 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/262 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-262 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/263 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/263 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-263 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/264 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/264 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-264 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/265 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/265 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-265 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/266 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/266 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-266 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/267 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/267 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-267 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/268 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/268 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-268 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/269 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/269 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-269 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/27 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/27 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-27 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/270 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/270 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-270 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/271 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/271 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-271 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/272 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/272 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-272 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/273 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/273 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-273 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/274 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/274 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-274 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/275 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/275 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-275 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/276 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/276 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-276 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/277 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/277 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-277 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/278 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/278 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-278 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/279 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/279 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-279 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/28 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/28 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-28 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/280 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/280 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-280 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/281 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/281 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-281 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/282 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/282 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-282 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/283 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/283 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-283 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/284 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/284 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-284 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/285 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/285 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-285 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/286 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/286 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-286 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/287 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/287 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-287 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/288 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/288 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-288 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/289 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/289 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-289 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/29 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/29 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-29 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/290 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/290 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-290 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/291 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/291 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-291 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/292 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/292 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-292 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/293 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/293 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-293 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/294 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/294 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-294 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/295 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/295 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-295 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/296 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/296 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-296 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/297 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/297 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-297 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/298 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/298 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-298 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/299 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/299 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-299 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/3 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/3 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-3 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/30 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/30 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-30 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/300 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/300 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-300 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/301 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/301 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-301 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/302 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/302 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-302 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/303 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/303 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-303 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/304 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/304 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-304 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/305 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/305 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-305 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/306 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/306 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-306 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/307 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/307 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-307 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/308 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/308 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-308 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/309 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/309 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-309 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/31 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/31 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-31 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/310 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/310 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-310 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/311 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/311 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-311 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/312 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/312 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-312 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/313 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/313 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-313 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/314 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/314 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-314 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/315 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/315 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-315 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/316 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/316 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-316 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/317 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/317 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-317 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/318 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/318 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-318 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/319 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/319 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-319 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/32 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/32 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-32 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/320 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/320 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-320 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/321 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/321 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-321 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/322 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/322 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-322 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/323 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/323 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-323 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/324 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/324 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-324 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/325 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/325 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-325 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/326 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/326 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-326 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/327 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/327 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-327 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/328 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/328 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-328 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/329 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/329 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-329 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/33 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/33 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-33 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/330 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/330 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-330 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/331 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/331 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-331 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/332 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/332 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-332 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/333 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/333 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-333 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/334 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/334 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-334 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/335 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/335 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-335 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/336 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/336 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-336 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/337 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/337 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-337 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/338 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/338 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-338 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/339 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/339 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-339 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/34 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/34 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-34 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/340 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/340 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-340 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/341 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/341 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-341 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/342 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/342 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-342 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/343 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/343 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-343 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/344 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/344 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-344 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/345 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/345 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-345 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/346 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/346 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-346 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/347 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/347 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-347 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/348 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/348 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-348 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/349 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/349 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-349 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/35 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/35 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-35 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/350 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/350 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-350 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/351 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/351 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-351 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/352 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/352 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-352 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/353 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/353 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-353 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/354 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/354 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-354 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/355 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/355 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-355 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/356 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/356 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-356 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/357 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/357 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-357 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/358 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/358 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-358 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/359 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/359 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-359 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/36 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/36 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-36 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/360 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/360 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-360 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/361 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/361 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-361 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/362 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/362 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-362 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/363 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/363 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-363 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/364 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/364 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-364 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/365 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/365 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-365 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/366 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/366 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-366 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/367 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/367 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-367 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/368 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/368 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-368 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/369 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/369 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-369 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/37 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/37 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-37 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/370 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/370 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-370 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/371 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/371 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-371 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/38 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/38 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-38 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/39 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/39 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-39 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/4 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/4 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-4 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/40 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/40 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-40 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/41 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/41 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-41 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/42 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/42 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-42 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/43 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/43 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-43 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/44 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/44 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-44 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/45 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/45 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-45 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/46 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/46 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-46 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/47 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/47 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-47 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/48 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/48 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-48 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/49 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/49 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-49 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/5 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/5 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-5 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/50 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/50 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-50 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/51 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/51 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-51 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/52 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/52 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-52 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/53 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/53 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-53 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/54 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/54 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-54 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/55 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/55 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-55 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/56 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/56 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-56 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/57 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/57 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-57 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/58 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/58 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-58 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/59 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/59 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-59 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/6 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/6 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-6 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/60 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/60 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-60 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/61 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/61 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-61 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/62 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/62 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-62 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/63 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/63 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-63 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/64 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/64 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-64 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/65 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/65 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-65 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/66 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/66 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-66 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/67 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/67 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-67 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/68 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/68 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-68 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/69 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/69 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-69 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/7 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/7 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-7 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/70 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/70 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-70 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/71 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/71 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-71 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/72 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/72 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-72 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/73 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/73 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-73 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/74 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/74 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-74 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/75 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/75 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-75 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/76 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/76 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-76 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/77 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/77 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-77 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/78 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/78 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-78 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/79 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/79 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-79 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/8 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/8 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-8 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/80 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/80 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-80 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/81 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/81 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-81 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/82 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/82 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-82 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/83 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/83 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-83 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/84 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/84 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-84 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/85 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/85 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-85 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/86 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/86 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-86 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/87 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/87 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-87 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/88 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/88 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-88 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/89 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/89 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-89 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/9 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/9 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-9 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/90 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/90 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-90 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/91 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/91 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-91 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/92 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/92 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-92 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/93 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/93 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-93 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/94 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/94 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-94 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/95 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/95 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-95 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/96 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/96 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-96 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/97 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/97 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-97 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/98 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/98 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-98 --batch_size 1000 --recursive &
single_to_multi_fast5 --input_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3/cluster/gjb_lab/cdr/ON_MinION_datastore/20181019_1436_20181019_VIRcomp_mRNA_2930_Anya/fast5/pass/99 --save_path /oak/stanford/groups/akundaje/marinovg/various/2022-10-07-direct-RNA-pA/02-Arabidopsis-PRJEB32782/VIRc_nanopore_drs_3-multiFAST5/99 --filename_base batch_output-20181019_1436_20181019_VIRcomp_mRNA_2930_Anya-multiFAST5-99 --batch_size 1000 --recursive &